Literature DB >> 20589643

The targets of CAPRI Rounds 13-19.

Joël Janin1.   

Abstract

Seven rounds of CAPRI predictions with a total of 14 targets were held in the period June 2007-November 2009. In addition to protease/inhibitor complexes and complexes with G-proteins, some of the targets displayed novel features presenting new challenges to the predictors: a complex with RNA, a leucine zipper to be built ab initio, and a human-designed protein. Nine targets were unbound or required model building; the other five had a bound component. Thirteen were assessed, and the results show that the predictor and scorer groups submitted two- or three-star (medium or high quality) models for eight of them, one-star (acceptable) models for three but failed on the unbound RNA complex and another unbound target.
© 2010 Wiley-Liss, Inc.

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Year:  2010        PMID: 20589643     DOI: 10.1002/prot.22774

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  8 in total

1.  Application of information theory to feature selection in protein docking.

Authors:  Olaf G Othersen; Arno G Stefani; Johannes B Huber; Heinrich Sticht
Journal:  J Mol Model       Date:  2011-07-12       Impact factor: 1.810

2.  SymmRef: a flexible refinement method for symmetric multimers.

Authors:  Efrat Mashiach-Farkash; Ruth Nussinov; Haim J Wolfson
Journal:  Proteins       Date:  2011-06-30

3.  Protein-protein complex structure predictions by multimeric threading and template recombination.

Authors:  Srayanta Mukherjee; Yang Zhang
Journal:  Structure       Date:  2011-07-13       Impact factor: 5.006

4.  Structural basis of Rnd1 binding to plexin Rho GTPase binding domains (RBDs).

Authors:  Hui Wang; Prasanta K Hota; Yufeng Tong; Buren Li; Limin Shen; Lyudmila Nedyalkova; Susmita Borthakur; Soonjeung Kim; Wolfram Tempel; Matthias Buck; Hee-Won Park
Journal:  J Biol Chem       Date:  2011-05-24       Impact factor: 5.157

5.  PRince: a web server for structural and physicochemical analysis of protein-RNA interface.

Authors:  Amita Barik; Abhishek Mishra; Ranjit Prasad Bahadur
Journal:  Nucleic Acids Res       Date:  2012-06-11       Impact factor: 16.971

6.  Optimizing scoring function of protein-nucleic acid interactions with both affinity and specificity.

Authors:  Zhiqiang Yan; Jin Wang
Journal:  PLoS One       Date:  2013-09-30       Impact factor: 3.240

7.  Protein Docking Model Evaluation by Graph Neural Networks.

Authors:  Xiao Wang; Sean T Flannery; Daisuke Kihara
Journal:  Front Mol Biosci       Date:  2021-05-25

8.  Protein-DNA docking with a coarse-grained force field.

Authors:  Piotr Setny; Ranjit Prasad Bahadur; Martin Zacharias
Journal:  BMC Bioinformatics       Date:  2012-09-11       Impact factor: 3.169

  8 in total

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