Literature DB >> 20589575

Stereoselective nucleoside deuteration for NMR studies of DNA.

Mark Lukin1, Carlos de los Santos.   

Abstract

A procedure has been elaborated for stereoselective deuterium substitution of one of the diastereotopic 5'-protons in 2'-deoxynucleotides. The synthetic scheme uses the reduction of the 5-oxosugar derivative with deuterated Alpine-Borane. The resulting deuterosugar is converted into pyrimidine nucleosides and incorporated into DNA using standard protocols. Comparison of two-dimensional NMR spectra of the fully protonated and partially deuterated duplexes allowed us to assign diastereotopic 5' protons, increasing the number of experimental restraints used for structure determination.

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Year:  2010        PMID: 20589575      PMCID: PMC3836267          DOI: 10.1080/15257770.2010.494650

Source DB:  PubMed          Journal:  Nucleosides Nucleotides Nucleic Acids        ISSN: 1525-7770            Impact factor:   1.381


  5 in total

1.  Preparation of partially 2H/13C-labelled RNA for NMR studies. Stereo-specific deuteration of the H5" in nucleotides.

Authors:  Jenny Cromsigt; Jürgen Schleucher; Tomas Gustafsson; Jan Kihlberg; Sybren Wijmenga
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

Review 2.  The synthesis of deuterionucleosides.

Authors:  A Földesi; A Trifonova; M K Kundu; J Chattopadhyaya
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2000 Oct-Dec       Impact factor: 1.381

3.  Stereoselective synthesis of chirally deuterated (S)-D-(6-(2)H(1))glucose.

Authors:  Lin Xu; Neil P J Price
Journal:  Carbohydr Res       Date:  2004-04-28       Impact factor: 2.104

Review 4.  Chemical and molecular basis of the carcinogenicity of Aristolochia plants.

Authors:  Heinz H Schmeiser; Marie Stiborovà; Volker M Arlt
Journal:  Curr Opin Drug Discov Devel       Date:  2009-01

5.  DNA adducts of aristolochic acid II: total synthesis and site-specific mutagenesis studies in mammalian cells.

Authors:  Sivaprasad Attaluri; Radha R Bonala; In-Young Yang; Mark A Lukin; Yujing Wen; Arthur P Grollman; Masaaki Moriya; Charles R Iden; Francis Johnson
Journal:  Nucleic Acids Res       Date:  2009-10-23       Impact factor: 16.971

  5 in total
  1 in total

1.  Structure and stability of DNA containing an aristolactam II-dA lesion: implications for the NER recognition of bulky adducts.

Authors:  Mark Lukin; Tanya Zaliznyak; Francis Johnson; Carlos de los Santos
Journal:  Nucleic Acids Res       Date:  2011-11-25       Impact factor: 16.971

  1 in total

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