Literature DB >> 20588267

Illuminating eukaryotic transcription start sites.

John A Stamatoyannopoulos.   

Abstract

Mesh：

Substances：

Year:  2010        PMID： 20588267     DOI： 10.1038/nmeth0710-501

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


× No keyword cloud information.
  11 in total

1.  Construction of a full-length enriched and a 5'-end enriched cDNA library using the oligo-capping method.

Authors:  Yutaka Suzuki; Sumio Sugano
Journal:  Methods Mol Biol       Date:  2003

2.  Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.

Authors:  Toshiyuki Shiraki; Shinji Kondo; Shintaro Katayama; Kazunori Waki; Takeya Kasukawa; Hideya Kawaji; Rimantas Kodzius; Akira Watahiki; Mari Nakamura; Takahiro Arakawa; Shiro Fukuda; Daisuke Sasaki; Anna Podhajska; Matthias Harbers; Jun Kawai; Piero Carninci; Yoshihide Hayashizaki
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-08       Impact factor: 11.205

Review 3.  The RNA polymerase II core promoter.

Authors:  Stephen T Smale; James T Kadonaga
Journal:  Annu Rev Biochem       Date:  2003-03-19       Impact factor: 23.643

Review 4.  Complex controls: the role of alternative promoters in mammalian genomes.

Authors:  Josette-Renée Landry; Dixie L Mager; Brian T Wilhelm
Journal:  Trends Genet       Date:  2003-11       Impact factor: 11.639

5.  Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation.

Authors:  Patrick Ng; Chia-Lin Wei; Wing-Kin Sung; Kuo Ping Chiu; Leonard Lipovich; Chin Chin Ang; Sanjay Gupta; Atif Shahab; Azmi Ridwan; Chee Hong Wong; Edison T Liu; Yijun Ruan
Journal:  Nat Methods       Date:  2005-01-09       Impact factor: 28.547

6.  Genome-wide analysis of mammalian promoter architecture and evolution.

Authors:  Piero Carninci; Albin Sandelin; Boris Lenhard; Shintaro Katayama; Kazuro Shimokawa; Jasmina Ponjavic; Colin A M Semple; Martin S Taylor; Pär G Engström; Martin C Frith; Alistair R R Forrest; Wynand B Alkema; Sin Lam Tan; Charles Plessy; Rimantas Kodzius; Timothy Ravasi; Takeya Kasukawa; Shiro Fukuda; Mutsumi Kanamori-Katayama; Yayoi Kitazume; Hideya Kawaji; Chikatoshi Kai; Mari Nakamura; Hideaki Konno; Kenji Nakano; Salim Mottagui-Tabar; Peter Arner; Alessandra Chesi; Stefano Gustincich; Francesca Persichetti; Harukazu Suzuki; Sean M Grimmond; Christine A Wells; Valerio Orlando; Claes Wahlestedt; Edison T Liu; Matthias Harbers; Jun Kawai; Vladimir B Bajic; David A Hume; Yoshihide Hayashizaki
Journal:  Nat Genet       Date:  2006-04-28       Impact factor: 38.330

7.  Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.

Authors:  Charles Plessy; Nicolas Bertin; Hazuki Takahashi; Roberto Simone; Md Salimullah; Timo Lassmann; Morana Vitezic; Jessica Severin; Signe Olivarius; Dejan Lazarevic; Nadine Hornig; Valerio Orlando; Ian Bell; Hui Gao; Jacqueline Dumais; Philipp Kapranov; Huaien Wang; Carrie A Davis; Thomas R Gingeras; Jun Kawai; Carsten O Daub; Yoshihide Hayashizaki; Stefano Gustincich; Piero Carninci
Journal:  Nat Methods       Date:  2010-06-13       Impact factor: 28.547

Review 8.  Implications of chimaeric non-co-linear transcripts.

Authors:  Thomas R Gingeras
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

9.  Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.

Authors: 
Journal:  Nature       Date:  2009-01-25       Impact factor: 49.962

10.  A paired-end sequencing strategy to map the complex landscape of transcription initiation.

Authors:  Ting Ni; David L Corcoran; Elizabeth A Rach; Shen Song; Eric P Spana; Yuan Gao; Uwe Ohler; Jun Zhu
Journal:  Nat Methods       Date:  2010-05-23       Impact factor: 28.547
View more
  6 in total

Review 1.  Machine learning applications in genetics and genomics.

Authors:  Maxwell W Libbrecht; William Stafford Noble
Journal:  Nat Rev Genet       Date:  2015-05-07       Impact factor: 53.242

2.  Identification and analysis of an outer-seed-coat-specific promoter from Arabidopsis thaliana.

Authors:  Elahe Esfandiari; Zhaoqing Jin; Ashraf Abdeen; Jonathan S Griffiths; Tamara L Western; George W Haughn
Journal:  Plant Mol Biol       Date:  2012-11-01       Impact factor: 4.076

Review 3.  What Is the Impact of mRNA 5' TL Heterogeneity on Translational Start Site Selection and the Mammalian Cellular Phenotype?

Authors:  Joseph A Curran; Benjamin Weiss
Journal:  Front Genet       Date:  2016-08-31       Impact factor: 4.599

4.  High-throughput identification of viral termini and packaging mechanisms in virome datasets using PhageTermVirome.

Authors:  Julian R Garneau; Véronique Legrand; Martial Marbouty; Maximilian O Press; Dean R Vik; Louis-Charles Fortier; Matthew B Sullivan; David Bikard; Marc Monot
Journal:  Sci Rep       Date:  2021-09-15       Impact factor: 4.996

5.  Nucleosome positioning and kinetics near transcription-start-site barriers are controlled by interplay between active remodeling and DNA sequence.

Authors:  Jyotsana J Parmar; John F Marko; Ranjith Padinhateeri
Journal:  Nucleic Acids Res       Date:  2013-09-24       Impact factor: 16.971

6.  Differential Expression Profile of lncRNAs from Primary Human Hepatocytes Following DEET and Fipronil Exposure.

Authors:  Robert D Mitchell; Andrew D Wallace; Ernest Hodgson; R Michael Roe
Journal:  Int J Mol Sci       Date:  2017-10-07       Impact factor: 5.923
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.