Literature DB >> 20585856

Creating prebiotic sanctuary: self-assembling supramolecular Peptide structures bind and stabilize RNA.

Ohad Carny1, Ehud Gazit.   

Abstract

Any attempt to uncover the origins of life must tackle the known 'blind watchmaker problem'. That is to demonstrate the likelihood of the emergence of a prebiotic system simple enough to be formed spontaneously and yet complex enough to allow natural selection that will lead to Darwinistic evolution. Studies of short aromatic peptides revealed their ability to self-assemble into ordered and stable structures. The unique physical and chemical characteristics of these peptide assemblies point out to their possible role in the origins of life. We have explored mechanisms by which self-assembling short peptides and RNA fragments could interact together and go through a molecular co-evolution, using diphenylalanine supramolecular assemblies as a model system. The spontaneous formation of these self-assembling peptides under prebiotic conditions, through the salt-induced peptide formation (SIPF) pathway was demonstrated. These peptide assemblies possess the ability to bind and stabilize ribonucleotides in a sequence-depended manner, thus increase their relative fitness. The formation of these peptide assemblies is dependent on the homochirality of the peptide monomers: while homochiral peptides (L-Phe-L-Phe and D-Phe-D-Phe) self-assemble rapidly in aqueous environment, heterochiral diastereoisomers (L-Phe-D-Phe and D-Phe-L-Phe) do not tend to self-assemble. This characteristic consists with the homochirality of all living matter. Finally, based on these findings, we propose a model for the role of short self-assembling peptides in the prebiotic molecular evolution and the origin of life.

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Year:  2010        PMID: 20585856     DOI: 10.1007/s11084-010-9219-9

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  28 in total

Review 1.  Peptides and the origin of life.

Authors:  B M Rode
Journal:  Peptides       Date:  1999       Impact factor: 3.750

2.  Prebiotic transamination.

Authors:  J C Bishop; S D Cross; T G Waddell
Journal:  Orig Life Evol Biosph       Date:  1997-08       Impact factor: 1.950

3.  Self-assembly at all scales.

Authors:  George M Whitesides; Bartosz Grzybowski
Journal:  Science       Date:  2002-03-29       Impact factor: 47.728

4.  Toward self-organization and complex matter.

Authors:  Jean-Marie Lehn
Journal:  Science       Date:  2002-03-29       Impact factor: 47.728

5.  Synthesis of peptide-nanotube platinum-nanoparticle composites.

Authors:  Yujiang Song; Sivakumar R Challa; Craig J Medforth; Yan Qiu; Richard K Watt; Donovan Pena; James E Miller; Frank van Swol; John A Shelnutt
Journal:  Chem Commun (Camb)       Date:  2004-04-06       Impact factor: 6.222

Review 6.  Mechanisms of amyloid fibril self-assembly and inhibition. Model short peptides as a key research tool.

Authors:  Ehud Gazit
Journal:  FEBS J       Date:  2005-12       Impact factor: 5.542

7.  Self-propagating beta-sheet polypeptide structures as prebiotic informational molecular entities: the amyloid world.

Authors:  C P J Maury
Journal:  Orig Life Evol Biosph       Date:  2009-03-20       Impact factor: 1.950

8.  Designed aromatic homo-dipeptides: formation of ordered nanostructures and potential nanotechnological applications.

Authors:  Meital Reches; Ehud Gazit
Journal:  Phys Biol       Date:  2006-02-02       Impact factor: 2.583

9.  Carbonyl sulfide-mediated prebiotic formation of peptides.

Authors:  Luke Leman; Leslie Orgel; M Reza Ghadiri
Journal:  Science       Date:  2004-10-08       Impact factor: 47.728

10.  Evaporation cycle experiments--a simulation of salt-induced peptide synthesis under possible prebiotic conditions.

Authors:  S Saetia; K R Liedl; A H Eder; B M Rode
Journal:  Orig Life Evol Biosph       Date:  1993-06       Impact factor: 1.950

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  5 in total

1.  An auto-catalytic surface for conformational replication of amyloid fibrils--genesis of an amyloid world?

Authors:  Per Hammarström; Malik M Ali; Rajesh Mishra; Belma Salagic; Samuel Svensson; Pentti Tengvall; Ingemar Lundström
Journal:  Orig Life Evol Biosph       Date:  2010-12-03       Impact factor: 1.950

Review 2.  Looked at life from both sides now.

Authors:  Jillian E Smith; Allisandra K Mowles; Anil K Mehta; David G Lynn
Journal:  Life (Basel)       Date:  2014-12-11

3.  Mutually stabilizing interactions between proto-peptides and RNA.

Authors:  Moran Frenkel-Pinter; Jay W Haynes; Ahmad M Mohyeldin; Martin C; Alyssa B Sargon; Anton S Petrov; Ramanarayanan Krishnamurthy; Nicholas V Hud; Loren Dean Williams; Luke J Leman
Journal:  Nat Commun       Date:  2020-06-19       Impact factor: 14.919

Review 4.  Green Rust: The Simple Organizing 'Seed' of All Life?

Authors:  Michael J Russell
Journal:  Life (Basel)       Date:  2018-08-27

5.  Amyloid and the origin of life: self-replicating catalytic amyloids as prebiotic informational and protometabolic entities.

Authors:  Carl Peter J Maury
Journal:  Cell Mol Life Sci       Date:  2018-03-17       Impact factor: 9.261

  5 in total

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