Literature DB >> 20578689

Molecular dynamics of an embedded-charge model of lysozyme aqueous solutions.

M C Abramo1, C Caccamo, D Costa, G Pellicane, R Ruberto.   

Abstract

The onset of liquid-vapor separation in an interaction site model of a lysozyme aqueous solution is investigated by means of molecular dynamics (MD). Calculations are performed for a soft-core version of a potential early introduced by Carlsson et al. (J. Phys. Chem. B 2001, 105, 9040; 2001, 105, 12189.) whose liquid-vapor coexistence was studied by Rosch and Errington (J. Phys. Chem. B 2007, 111, 12591.); our modified model preserves the tailoring onto the experimental lysozyme solution properties embodied by those descriptions. We first show that the structural results obtained by Carlsson et al. at ambient conditions are quite well reproduced by our approach. Then, we cool the system along an isochoric path by monitoring the structural and dynamical properties at various temperatures. We thus show that a fluid-fluid separation takes place at a temperature 15% below the presumed binodal; in particular, we observe that density inhomogeneities develop rather early in the MD run and evolve over tens of nanoseconds into two dense aggregates that eventually merge, after approximately 100 ns more, into a single liquid phase separated from a vapor region by a well-defined planar interface. The densities of the two coexisting fluids are compatible with previous determinations of the binodal line. The connections of this work to the overall scenario of phase stability investigations in protein solutions, as well as possible developments based on the use of more refined models, are discussed.

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Year:  2010        PMID: 20578689     DOI: 10.1021/jp101590y

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  3 in total

Review 1.  Reaching new levels of realism in modeling biological macromolecules in cellular environments.

Authors:  Michael Feig; Yuji Sugita
Journal:  J Mol Graph Model       Date:  2013-08-28       Impact factor: 2.518

2.  Protein-Ligand Interaction Detection with a Novel Method of Transient Induced Molecular Electronic Spectroscopy (TIMES): Experimental and Theoretical Studies.

Authors:  Tiantian Zhang; Tao Wei; Yuanyuan Han; Heng Ma; Mohammadreza Samieegohar; Ping-Wei Chen; Ian Lian; Yu-Hwa Lo
Journal:  ACS Cent Sci       Date:  2016-10-24       Impact factor: 14.553

3.  Nanomedical Relevance of the Intermolecular Interaction Dynamics-Examples from Lysozymes and Insulins.

Authors:  Ruiyan Zhang; Ning Zhang; Marzieh Mohri; Lisha Wu; Thomas Eckert; Vadim B Krylov; Andrea Antosova; Slavomira Ponikova; Zuzana Bednarikova; Philipp Markart; Andreas Günther; Bengt Norden; Martin Billeter; Roland Schauer; Axel J Scheidig; Bhisma N Ratha; Anirban Bhunia; Karsten Hesse; Mushira Abdelaziz Enani; Jürgen Steinmeyer; Athanasios K Petridis; Tibor Kozar; Zuzana Gazova; Nikolay E Nifantiev; Hans-Christian Siebert
Journal:  ACS Omega       Date:  2019-02-27
  3 in total

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