Literature DB >> 20577998

Probing the active site of MIO-dependent aminomutases, key catalysts in the biosynthesis of beta-amino acids incorporated in secondary metabolites.

Heather A Cooke1, Steven D Bruner.   

Abstract

The tyrosine aminomutase SgTAM produces (S)-ss-tyrosine from L-tyrosine in the biosynthesis of the enediyne antitumor antibiotic C-1027. This conversion is promoted by the methylideneimidazole-5-one (MIO) prosthetic group. MIO was first identified in the homologous family of ammonia lyases, which deaminate aromatic amino acids to form alpha,ss-unsaturated carboxylates. Studies of substrate specificity have been described for lyases but there have been limited reports in altering the substrate specificity of aminomutases. Furthermore, it remains unclear as to what structural properties are responsible for catalyzing the presumed readdition of the amino group into the alpha,ss-unsaturated intermediates to form ss-amino acids. Attempts to elucidate specificity and mechanistic determinants of SgTAM have also proved to be difficult as it is recalcitrant to perturbations to the active site via mutagenesis. An X-ray cocrystal structure of the SgTAM mutant of the catalytic base with L-tyrosine verified important substrate binding residues as well as the enzymatic base. Further mutagenesis revealed that removal of these crucial interactions renders the enzyme inactive. Proposed structural determinants for mutase activity probed via mutagenesis, time-point assays and X-ray crystallography revealed a complicated role for these residues in maintaining key quaternary structure properties that aid in catalysis. Copyright 2010 Wiley Periodicals, Inc.

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Year:  2010        PMID: 20577998      PMCID: PMC3419534          DOI: 10.1002/bip.21500

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  24 in total

1.  Crystal structure of histidine ammonia-lyase revealing a novel polypeptide modification as the catalytic electrophile.

Authors:  T F Schwede; J Rétey; G E Schulz
Journal:  Biochemistry       Date:  1999-04-27       Impact factor: 3.162

Review 2.  Methylidene-imidazolone: a novel electrophile for substrate activation.

Authors:  L Poppe
Journal:  Curr Opin Chem Biol       Date:  2001-10       Impact factor: 8.822

3.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
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4.  Discovery of a substrate selectivity switch in tyrosine ammonia-lyase, a member of the aromatic amino acid lyase family.

Authors:  Kevin T Watts; Benjamin N Mijts; Pyung Cheon Lee; Andrew J Manning; Claudia Schmidt-Dannert
Journal:  Chem Biol       Date:  2006-12

Review 5.  Friedel-Crafts-type mechanism for the enzymatic elimination of ammonia from histidine and phenylalanine.

Authors:  László Poppe; János Rétey
Journal:  Angew Chem Int Ed Engl       Date:  2005-06-13       Impact factor: 15.336

6.  Cloning, heterologous expression, and characterization of a phenylalanine aminomutase involved in Taxol biosynthesis.

Authors:  Kevin D Walker; Karin Klettke; Takumi Akiyama; Rodney Croteau
Journal:  J Biol Chem       Date:  2004-10-19       Impact factor: 5.157

7.  Use of nitrogen-15 and deuterium isotope effects to determine the chemical mechanism of phenylalanine ammonia-lyase.

Authors:  J D Hermes; P M Weiss; W W Cleland
Journal:  Biochemistry       Date:  1985-06-04       Impact factor: 3.162

8.  Crystal structure of phenylalanine ammonia lyase: multiple helix dipoles implicated in catalysis.

Authors:  Joseph C Calabrese; Douglas B Jordan; Amechand Boodhoo; Sima Sariaslani; Todd Vannelli
Journal:  Biochemistry       Date:  2004-09-14       Impact factor: 3.162

9.  Discovery of additional members of the tyrosine aminomutase enzyme family and the mutational analysis of CmdF.

Authors:  Daniel Krug; Rolf Müller
Journal:  Chembiochem       Date:  2009-03-02       Impact factor: 3.164

10.  Kinetic analysis of the 4-methylideneimidazole-5-one-containing tyrosine aminomutase in enediyne antitumor antibiotic C-1027 biosynthesis.

Authors:  Steven D Christenson; Weiming Wu; M Ashley Spies; Ben Shen; Michael D Toney
Journal:  Biochemistry       Date:  2003-11-04       Impact factor: 3.162

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  2 in total

1.  Biochemical and Structural Analysis of Substrate Specificity of a Phenylalanine Ammonia-Lyase.

Authors:  Se-Young Jun; Steven A Sattler; Gabriel S Cortez; Wilfred Vermerris; Scott E Sattler; ChulHee Kang
Journal:  Plant Physiol       Date:  2017-12-01       Impact factor: 8.340

2.  A new member of the 4-methylideneimidazole-5-one-containing aminomutase family from the enediyne kedarcidin biosynthetic pathway.

Authors:  Sheng-Xiong Huang; Jeremy R Lohman; Tingting Huang; Ben Shen
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-30       Impact factor: 11.205

  2 in total

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