Literature DB >> 20572691

Two- and three-body interatomic dispersion energy contributions to binding in molecules and solids.

O Anatole von Lilienfeld1, Alexandre Tkatchenko.   

Abstract

We present numerical estimates of the leading two- and three-body dispersion energy terms in van der Waals interactions for a broad variety of molecules and solids. The calculations are based on London and Axilrod-Teller-Muto expressions where the required interatomic dispersion energy coefficients, C(6) and C(9), are computed "on the fly" from the electron density. Inter- and intramolecular energy contributions are obtained using the Tang-Toennies (TT) damping function for short interatomic distances. The TT range parameters are equally extracted on the fly from the electron density using their linear relationship to van der Waals radii. This relationship is empiricially determined for all the combinations of He-Xe rare gas dimers, as well as for the He and Ar trimers. The investigated systems include the S22 database of noncovalent interactions, Ar, benzene and ice crystals, bilayer graphene, C(60) dimer, a peptide (Ala(10)), an intercalated drug-DNA model [ellipticine-d(CG)(2)], 42 DNA base pairs, a protein (DHFR, 2616 atoms), double stranded DNA (1905 atoms), and 12 molecular crystal polymorphs from crystal structure prediction blind test studies. The two- and three-body interatomic dispersion energies are found to contribute significantly to binding and cohesive energies, for bilayer graphene the latter reaches 50% of experimentally derived binding energy. These results suggest that interatomic three-body dispersion potentials should be accounted for in atomistic simulations when modeling bulky molecules or condensed phase systems.

Entities:  

Year:  2010        PMID: 20572691     DOI: 10.1063/1.3432765

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  18 in total

1.  Density-functional approach to the three-body dispersion interaction based on the exchange dipole moment.

Authors:  Emil Proynov; Fenglai Liu; Zhengting Gan; Matthew Wang; Jing Kong
Journal:  J Chem Phys       Date:  2015-08-28       Impact factor: 3.488

2.  Perspective: Quantum mechanical methods in biochemistry and biophysics.

Authors:  Qiang Cui
Journal:  J Chem Phys       Date:  2016-10-14       Impact factor: 3.488

3.  Collective many-body van der Waals interactions in molecular systems.

Authors:  Robert A DiStasio; O Anatole von Lilienfeld; Alexandre Tkatchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-24       Impact factor: 11.205

4.  Leveraging local MP2 to reduce basis set superposition errors: An efficient first-principles based force-field for carbon dioxide.

Authors:  Ying Yuan; Zhonghua Ma; Feng Wang
Journal:  J Chem Phys       Date:  2019-11-14       Impact factor: 3.488

5.  A comparison of three DFT exchange-correlation functionals and two basis sets for the prediction of the conformation distribution of hydrated polyglycine.

Authors:  Ying Yuan; Feng Wang
Journal:  J Chem Phys       Date:  2021-09-07       Impact factor: 4.304

6.  Efficient Parameter Estimation of Generalizable Coarse-Grained Protein Force Fields Using Contrastive Divergence: A Maximum Likelihood Approach.

Authors:  Csilla Várnai; Nikolas S Burkoff; David L Wild
Journal:  J Chem Theory Comput       Date:  2013-11-15       Impact factor: 6.006

7.  Effects of van der Waals Interactions in the Adsorption of Isooctane and Ethanol on Fe(100) Surfaces.

Authors:  Pedro O Bedolla; Gregor Feldbauer; Michael Wolloch; Stefan J Eder; Nicole Dörr; Peter Mohn; Josef Redinger; András Vernes
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2014-07-24       Impact factor: 4.126

8.  Determining the hydration free energies of selected small molecules with MP2 and local MP2 through adaptive force matching.

Authors:  Dong Zheng; Ying Yuan; Feng Wang
Journal:  J Chem Phys       Date:  2021-03-14       Impact factor: 3.488

9.  Density Functional Investigation of the Adsorption of Isooctane, Ethanol, and Acetic Acid on a Water-Covered Fe(100) Surface.

Authors:  Pedro O Bedolla; Gregor Feldbauer; Michael Wolloch; Christoph Gruber; Stefan J Eder; Nicole Dörr; Peter Mohn; Josef Redinger; András Vernes
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2014-09-09       Impact factor: 4.126

10.  Molecular simulation of water and hydration effects in different environments: challenges and developments for DFTB based models.

Authors:  Puja Goyal; Hu-Jun Qian; Stephan Irle; Xiya Lu; Daniel Roston; Toshifumi Mori; Marcus Elstner; Qiang Cui
Journal:  J Phys Chem B       Date:  2014-09-16       Impact factor: 2.991

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