| Literature DB >> 20565758 |
Anne-Marie C Dingemans1, Vivian van den Boogaart, Bettine A Vosse, Robert-Jan van Suylen, Arjan W Griffioen, Victor L Thijssen.
Abstract
BACKGROUND: Selection of early stage non-small cell lung cancer patients with a high risk of recurrence is warranted in order to select patients who will benefit from adjuvant treatment strategies. We evaluated the prognostic value of integrin expression profiles in a retrospective study on frozen primary tumors of 68 patients with early stage non-small cell lung cancer.Entities:
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Year: 2010 PMID: 20565758 PMCID: PMC2895598 DOI: 10.1186/1476-4598-9-152
Source DB: PubMed Journal: Mol Cancer ISSN: 1476-4598 Impact factor: 27.401
Characteristics of included NSCLC patients.
| 68 | |
| 69.1 (44.5 - 90.2) | |
| Male | 51 (75%) |
| Female | 17 (25%) |
| Adenocarcinoma | 24 (35%) |
| Squamous cell carcinoma | 33 (49%) |
| Large cell carcinoma | 10 (15%) |
| Pleiomorph carcinoma | 1 (1%) |
| Stage IA | 6 (9%) |
| Stage IB | 34 (50%) |
| Stage IIA | 6 (9%) |
| Stage IIB | 18 (26%) |
| Stage IIIA | 4 (6%) |
| Never | 2 (3%) |
| Former | 42 (62%) |
| Current | 19 (28%) |
| Unknown | 5 (7%) |
| 27.3 (1.7-126.7) | |
| 16.6 (1.6 - 125.2) |
Primers targeting human integrins.
| Target | Forward primer (5' - 3') | Reverse primer (5' - 3') |
|---|---|---|
| ITGα1 | GGTTCCTACTTTGGCAGTATT | AACCTTGTCTGATTGAGAGCA |
| ITGα2 | GGAACGGGACTTTCGCAT | GGTACTTCGGCTTTCTCATCA |
| ITGα3 | AAGGGACCTTCAGGTGCA | TGTAGCCGGTGATTTACCAT |
| ITGα4 | GCTTCTCAGATCTGCTCGTG | GTCACTTCCAACGAGGTTTG |
| ITGα5 | TGCAGTGTGAGGCTGTGTACA | GTGGCCACCTGACGCTCT |
| ITGα6 | TTGAATATACTGCTAACCCCG | TCGAAACTGAACTCTTGAGGATAG |
| ITGα7 | CTGTTTCAGCTACATTGCAGTC | GCCTGGTGCTTGGGTTCT |
| ITGα11 | GGAGGAAGACTTGCGTCG | CACAGGTTCCCCAGTAGATG |
| ITGαV | AATCTTCCAATTGAGGATATCAC | AAAACAGCCAGTAGCAACAAT |
| ITGβ1 | GAAGGGTTGCCCTCCAGA | GCTTGAGCTTCTCTGCTGTT |
| ITGβ3 | CCGTGACGAGATTGAGTCA | AGGATGGACTTTCCACTAGAA |
| ITGβ4 | AGACGAGATGTTCAGGGACC | GGTCTCCTCTGTGATTTGGAA |
| ITGβ5 | GGAGCCAGAGTGTGGAAACA | GAAACTTTGCAAACTCCCTC |
| ITGβ6 | TCAGCGTGACTGTGAATATCC | GTGACATTTGGAGCTGTTCAC |
| ITGβ8 | AATTTGGTAGTGGAAGCCTATC | GTCACGTTTCTGCATCCTTC |
| bACT | GCTGTGCTACGTCGCCCTG | GGAGGAGCTGGAAGCAGCC |
| cycloA | CTCGAATAAGTTTGACTTGTGTTT | CTAGGCATGGGAGGGAACA |
| b2MG | TCCATCCGACATTGAAGTTG | CGGCAGGCATACTCATCTT |
| HPRT1 | AGAATGTCTTGATTGTGGAAGA | ACCTTGACCATCTTTGGATTA |
ITG = integrin, bACT = beta-actin, cycloA = cyclophilin A, b2MG = beta-2-microglobulin, HPRT = hypoxanthine-guanine phosphoribosyltransferase 1.
Figure 1Integrin expression profile in NSCLC. A) Agarose gel electrophoresis of the specific integrin fragments. M = 100 bp DNA marker. B) Representative dilution curves of 4 integrins showing a broad linear range of detection. Ct = Cycle threshold. C) Box plot of the overall integrin expression profile in NSCLC tissues.
Characteristics of human integrin primer pairs in qPCR.
| Integrin | fragment length | upper limit | slope |
|---|---|---|---|
| 129 | 26.1 | -3.38 | |
| 154 | 31.2 | -3.04 | |
| 129 | 29.0 | -3.38 | |
| 131 | 36.4 | -3.41 | |
| 88 | 32.0 | -3.23 | |
| 113 | 30.5 | -3.26 | |
| 150 | 31.9 | -3.43 | |
| 123 | 34.0 | -3.36 | |
| 140 | 33.9 | -3.31 | |
| 107 | 34.3 | -3.23 | |
| 132 | 30.1 | -3.30 | |
| 115 | 29.8 | -3.12 | |
| 143 | 34.4 | -3.39 | |
| 155 | 32.6 | -3.33 | |
| 146 | 33.6 | -3.50 |
ITG = integrin, bp = base pairs, Ct = Cycle threshold.
Figure 2Integrin expression profile and overall survival in NSCLC. Kaplan Meier plot of overall survival (OS) of patients with detectable or undetectable integrin beta3 expression and of patients with low (below median) or high (above median) expression of the indicated integrins.
Integrin expression and overall survival
| Integrin | Median OS (95% CI) in months | ||
|---|---|---|---|
| Low expression* | High expression | P | |
| 39.3 (0.0-97.4) | 23.2 (0.0-46.8) | Ns | |
| 31.9 (0.0-81.1) | 18.4 (0.0-46.4) | Ns | |
| 61.8 (21.1-102.5) | 16.2 (12.2-20.2) | ||
| 17.5 (0.0-50.5) | 30.6 (10.1-51.2) | Ns | |
| 44.4 (12.1-76.6) | 14.7 (9.0-20.4) | ||
| 31.9 (15.0-48.8) | 36.1 (0.0-73.6) | Ns | |
| 31.9 (0.0-63.8) | 23.2 (0.0-52.2) | Ns | |
| 31.9 (10.0-53.8) | 32.8 (0.0-71.5) | Ns | |
| 23.2 (0.0-56.1) | 30.6 (8.7-52.5) | Ns | |
| 61.8 (0.0-129.3) | 16.1 (13.2-19.0) | ||
| 61.8 (22.8-100.8) | 11.5 (5.4-17.6) | ||
| 36.1 (20.6-51.5) | 16.3 (14.1-18.5) | Ns | |
| 24.0 (3.5-44.6) | 23.2 (0.0-50.8) | Ns | |
| 32.8 (4.5-61.1) | 31.9 (0.0-64.5) | Ns | |
| 23.2 (3.0-43.4) | 36.1 (1.2-71.0) | Ns | |
*Low = below median, High = above median
Figure 3Integrin expression and disease free survival in NSCLC. Kaplan Meier plots of disease free survival (DFS) of patients with detectable or undetectable integrin beta3 expression and of patients with low (below median) or high (above median) expression of the indicated integrins.
Integrin expression and disease free survival
| Integrin | Median DFS (95% CI) in months | ||
|---|---|---|---|
| Low expression* | High expression | P | |
| 14.8 (0.0-64.2) | 18.4 (8.3-28.5) | Ns | |
| 20.8 (0.0-46.5) | 18.4 (9.1-27.7) | Ns | |
| 32.8 (0.0-73.3) | 13.0 (8.5-17.4) | Ns | |
| 13.8 (0.0-29.4) | 18.6 (2.6-34.6) | Ns | |
| 32.8 (5.7-59.9) | 10.0 (8.4-11.6) | ||
| 20.8 (10.1-31.5) | 26.4 (2.2-50.6) | Ns | |
| 18.6 (1.0-36.5) | 20.8 (0.0-42.0) | Ns | |
| 20.8 (3.4-38.2) | 26.4 (0.0-58.5) | Ns | |
| 14.8 (0.0-37.1) | 18.4 (8.6-28.2) | Ns | |
| 61.8 (8.6-115.0) | 12.4 (8.2-16.7) | ||
| 32.8 (0.0-79.4) | 9.9 (2.8-17.1) | ||
| 20.9 (7.4-34.4) | 13.0 (4.3-21.7) | Ns | |
| 14.8 (2.0-27.7) | 20.8 (0.0-46.1) | Ns | |
| 26.4 (12.0-40.8) | 14.8 (2.6-27.0) | Ns | |
| 10.7 (0.0-25.0) | 26.4 (4.2-48.6) | Ns | |
*Low = below median, High = above median
Figure 4Integrin expression profile and survival in subtypes of NSCLC. A) Bar graph showing the subtype specific integrin expression. B) Scatter plot showing the correlation in integrin expression between the different subtypes of NSCLC. C) Kaplan Meier plots of overall survival of patients with low (below median) or high (above median) expression of the indicated integrins in squamous carcinoma.
Fold expression differences between NSCLC subtypes.
| Integrin | Adeno vs. | Large cell vs. | Large cell vs. |
|---|---|---|---|
| 0.8 | 0.6 | 0.7 | |
| 1.0 | |||
| 1.2 | 0.8 | ||
| 0.9 | 0.9 | 1.0 | |
| 0.8 | 1.4 | ||
| 0.7 | |||
| 0.6 | 0.4 | 0.7 | |
| 0.8 | 0.8 | 1.0 | |
| 1.1 | 0.9 | ||
| 0.7 | 1.0 | 1.5 | |
| 1.8 | |||
| 0.6 | 1.1 | ||
| 0.6 | 0.3 | 0.4 | |
| 1.7 |
*statistically significant. For p-value see Figure 4.