Literature DB >> 20565126

Biochemical and structural characterization of a ureidoglycine aminotransferase in the Klebsiella pneumoniae uric acid catabolic pathway.

Jarrod B French1, Steven E Ealick.   

Abstract

Many plants, fungi, and bacteria catabolize allantoin as a mechanism for nitrogen assimilation. Recent reports have shown that in plants and some bacteria the product of hydrolysis of allantoin by allantoinase is the unstable intermediate ureidoglycine. While this molecule can spontaneously decay, genetic analysis of some bacterial genomes indicates that an aminotransferase may be present in the pathway. Here we present evidence that Klebsiella pneumoniae HpxJ is an aminotransferase that preferentially converts ureidoglycine and an alpha-keto acid into oxalurate and the corresponding amino acid. We determined the crystal structure of HpxJ, allowing us to present an explanation for substrate specificity.

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Year:  2010        PMID: 20565126      PMCID: PMC2912414          DOI: 10.1021/bi1006755

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

Review 1.  Pyridoxal phosphate enzymes: mechanistic, structural, and evolutionary considerations.

Authors:  Andrew C Eliot; Jack F Kirsch
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

2.  Crystal structure of an alanine-glyoxylate aminotransferase from Anabaena sp. at 1.70 A resolution reveals a noncovalently linked PLP cofactor.

Authors:  Gye Won Han; Robert Schwarzenbacher; Rebecca Page; Lukasz Jaroszewski; Polat Abdubek; Eileen Ambing; Tanya Biorac; Jaume M Canaves; Hsiu-Ju Chiu; Xiaoping Dai; Ashley M Deacon; Michael DiDonato; Marc-André Elsliger; Adam Godzik; Carina Grittini; Slawomir K Grzechnik; Joanna Hale; Eric Hampton; Justin Haugen; Michael Hornsby; Heath E Klock; Eric Koesema; Andreas Kreusch; Peter Kuhn; Scott A Lesley; Inna Levin; Daniel McMullan; Timothy M McPhillips; Mitchell D Miller; Andrew Morse; Kin Moy; Edward Nigoghossian; Jie Ouyang; Jessica Paulsen; Kevin Quijano; Ron Reyes; Eric Sims; Glen Spraggon; Raymond C Stevens; Henry van den Bedem; Jeff Velasquez; Juli Vincent; Frank von Delft; Xianhong Wang; Bill West; Aprilfawn White; Guenter Wolf; Qingping Xu; Olga Zagnitko; Keith O Hodgson; John Wooley; Ian A Wilson
Journal:  Proteins       Date:  2005-03-01

3.  Allantoate hydrolysis by allantoate amidohydrolase.

Authors:  C van der Drift; F E de Windt; G D Vogels
Journal:  Arch Biochem Biophys       Date:  1970-01       Impact factor: 4.013

Review 4.  Degradation of purines and pyrimidines by microorganisms.

Authors:  G D Vogels; C Van der Drift
Journal:  Bacteriol Rev       Date:  1976-06

Review 5.  Pyrimidine and purine biosynthesis and degradation in plants.

Authors:  Rita Zrenner; Mark Stitt; Uwe Sonnewald; Ralf Boldt
Journal:  Annu Rev Plant Biol       Date:  2006       Impact factor: 26.379

6.  Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.

Authors:  E Cusa; N Obradors; L Baldomà; J Badía; J Aguilar
Journal:  J Bacteriol       Date:  1999-12       Impact factor: 3.490

7.  Spectroscopic characterization of intermediates in the urate oxidase reaction.

Authors:  K Kahn; P A Tipton
Journal:  Biochemistry       Date:  1998-08-18       Impact factor: 3.162

8.  Reaction of aspartate aminotransferase with C5-dicarboxylic acids: comparison with the reaction with C4-dicarboxylic acids.

Authors:  Mohammad Mainul Islam; Hideyuki Hayashi; Hiroyuki Kagamiyama
Journal:  J Biochem       Date:  2003-08       Impact factor: 3.387

9.  The hpx genetic system for hypoxanthine assimilation as a nitrogen source in Klebsiella pneumoniae: gene organization and transcriptional regulation.

Authors:  Lucia de la Riva; Josefa Badia; Juan Aguilar; Robert A Bender; Laura Baldoma
Journal:  J Bacteriol       Date:  2008-10-10       Impact factor: 3.490

10.  Purine utilization by Klebsiella oxytoca M5al: genes for ring-oxidizing and -opening enzymes.

Authors:  Scott D Pope; Li-Ling Chen; Valley Stewart
Journal:  J Bacteriol       Date:  2008-12-05       Impact factor: 3.490

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  7 in total

1.  Biochemical and structural characterization of Klebsiella pneumoniae oxamate amidohydrolase in the uric acid degradation pathway.

Authors:  Katherine A Hicks; Steven E Ealick
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-05-25       Impact factor: 7.652

2.  Structural and kinetic insights into the mechanism of 5-hydroxyisourate hydrolase from Klebsiella pneumoniae.

Authors:  Jarrod B French; Steven E Ealick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-07-12

3.  An aminotransferase branch point connects purine catabolism to amino acid recycling.

Authors:  Ileana Ramazzina; Roberto Costa; Laura Cendron; Rodolfo Berni; Alessio Peracchi; Giuseppe Zanotti; Riccardo Percudani
Journal:  Nat Chem Biol       Date:  2010-09-19       Impact factor: 15.040

4.  The purinosome, a multi-protein complex involved in the de novo biosynthesis of purines in humans.

Authors:  Hong Zhao; Jarrod B French; Ye Fang; Stephen J Benkovic
Journal:  Chem Commun (Camb)       Date:  2013-04-11       Impact factor: 6.222

5.  The multi-drug efflux system AcrABZ-TolC is essential for infection of Salmonella Typhimurium by the flagellum-dependent bacteriophage Chi.

Authors:  Nathaniel C Esteves; Steffen Porwollik; Michael McClelland; Birgit E Scharf
Journal:  J Virol       Date:  2021-03-17       Impact factor: 6.549

6.  Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase.

Authors:  Qian Jia; Wei Xie
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

7.  Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism.

Authors:  Matthieu Barba; Raphaël Dutoit; Christianne Legrain; Bernard Labedan
Journal:  BMC Syst Biol       Date:  2013-10-05
  7 in total

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