Literature DB >> 20562256

Bioinformatics training: a review of challenges, actions and support requirements.

Maria Victoria Schneider1, James Watson, Teresa Attwood, Kristian Rother, Aidan Budd, Jennifer McDowall, Allegra Via, Pedro Fernandes, Tommy Nyronen, Thomas Blicher, Phil Jones, Marie-Claude Blatter, Javier De Las Rivas, David Phillip Judge, Wouter van der Gool, Cath Brooksbank.   

Abstract

As bioinformatics becomes increasingly central to research in the molecular life sciences, the need to train non-bioinformaticians to make the most of bioinformatics resources is growing. Here, we review the key challenges and pitfalls to providing effective training for users of bioinformatics services, and discuss successful training strategies shared by a diverse set of bioinformatics trainers. We also identify steps that trainers in bioinformatics could take together to advance the state of the art in current training practices. The ideas presented in this article derive from the first Trainer Networking Session held under the auspices of the EU-funded SLING Integrating Activity, which took place in November 2009.

Mesh:

Year:  2010        PMID: 20562256     DOI: 10.1093/bib/bbq021

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  18 in total

1.  Ten simple rules for developing a short bioinformatics training course.

Authors:  Allegra Via; Javier De Las Rivas; Teresa K Attwood; David Landsman; Michelle D Brazas; Jack A M Leunissen; Anna Tramontano; Maria Victoria Schneider
Journal:  PLoS Comput Biol       Date:  2011-10-27       Impact factor: 4.475

2.  Training experimental biologists in bioinformatics.

Authors:  Pedro Fernandes; Pooja Jain; Catarina Moita
Journal:  Adv Bioinformatics       Date:  2012-01-31

Review 3.  Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.

Authors:  Maria V Schneider; Peter Walter; Marie-Claude Blatter; James Watson; Michelle D Brazas; Kristian Rother; Aidan Budd; Allegra Via; Celia W G van Gelder; Joachim Jacob; Pedro Fernandes; Tommi H Nyrönen; Javier De Las Rivas; Thomas Blicher; Rafael C Jimenez; Jane Loveland; Jennifer McDowall; Phil Jones; Brendan W Vaughan; Rodrigo Lopez; Teresa K Attwood; Catherine Brooksbank
Journal:  Brief Bioinform       Date:  2011-11-22       Impact factor: 11.622

4.  GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training.

Authors:  Teresa K Attwood; Teresa K Atwood; Erik Bongcam-Rudloff; Michelle E Brazas; Manuel Corpas; Pascale Gaudet; Fran Lewitter; Nicola Mulder; Patricia M Palagi; Maria Victoria Schneider; Celia W G van Gelder
Journal:  PLoS Comput Biol       Date:  2015-04-09       Impact factor: 4.475

5.  The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability.

Authors:  Jing-Woei Li; Dan Bolser; Magnus Manske; Federico Manuel Giorgi; Nikolay Vyahhi; Björn Usadel; Bernardo J Clavijo; Ting-Fung Chan; Nathalie Wong; Daniel Zerbino; Maria Victoria Schneider
Journal:  Brief Bioinform       Date:  2013-06-21       Impact factor: 11.622

6.  Best practices in bioinformatics training for life scientists.

Authors:  Allegra Via; Thomas Blicher; Erik Bongcam-Rudloff; Michelle D Brazas; Cath Brooksbank; Aidan Budd; Javier De Las Rivas; Jacqueline Dreyer; Pedro L Fernandes; Celia van Gelder; Joachim Jacob; Rafael C Jimenez; Jane Loveland; Federico Moran; Nicola Mulder; Tommi Nyrönen; Kristian Rother; Maria Victoria Schneider; Teresa K Attwood
Journal:  Brief Bioinform       Date:  2013-06-25       Impact factor: 11.622

7.  iAnn: an event sharing platform for the life sciences.

Authors:  Rafael C Jimenez; Juan P Albar; Jong Bhak; Marie-Claude Blatter; Thomas Blicher; Michelle D Brazas; Cath Brooksbank; Aidan Budd; Javier De Las Rivas; Jacqueline Dreyer; Marc A van Driel; Michael J Dunn; Pedro L Fernandes; Celia W G van Gelder; Henning Hermjakob; Vassilios Ioannidis; David P Judge; Pascal Kahlem; Eija Korpelainen; Hans-Joachim Kraus; Jane Loveland; Christine Mayer; Jennifer McDowall; Federico Moran; Nicola Mulder; Tommi Nyronen; Kristian Rother; Gustavo A Salazar; Reinhard Schneider; Allegra Via; Jose M Villaveces; Ping Yu; Maria V Schneider; Teresa K Attwood; Manuel Corpas
Journal:  Bioinformatics       Date:  2013-06-05       Impact factor: 6.937

8.  The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Authors:  Manuel Corpas; Rafael C Jimenez; Erik Bongcam-Rudloff; Aidan Budd; Michelle D Brazas; Pedro L Fernandes; Bruno Gaeta; Celia van Gelder; Eija Korpelainen; Fran Lewitter; Annette McGrath; Daniel MacLean; Patricia M Palagi; Kristian Rother; Jan Taylor; Allegra Via; Mick Watson; Maria Victoria Schneider; Teresa K Attwood
Journal:  Bioinformatics       Date:  2014-09-04       Impact factor: 6.937

Review 9.  Workforce preparation: the Biohealth computing model for Master and PhD students.

Authors:  Marta Cascante; Pedro de Atauri; David Gomez-Cabrero; Peter Wagner; Josep J Centelles; Silvia Marin; Isaac Cano; Filip Velickovski; Igor Marin de Mas; Dieter Maier; Josep Roca; Philippe Sabatier
Journal:  J Transl Med       Date:  2014-11-28       Impact factor: 5.531

10.  Rise and demise of bioinformatics? Promise and progress.

Authors:  Christos A Ouzounis
Journal:  PLoS Comput Biol       Date:  2012-04-26       Impact factor: 4.475

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