Literature DB >> 20558740

Structure of oxalacetate acetylhydrolase, a virulence factor of the chestnut blight fungus.

Chen Chen1, Qihong Sun, Buvaneswari Narayanan, Donald L Nuss, Osnat Herzberg.   

Abstract

Oxalacetate acetylhydrolase (OAH), a member of the phosphoenolpyruvate mutase/isocitrate lyase superfamily, catalyzes the hydrolysis of oxalacetate to oxalic acid and acetate. This study shows that knock-out of the oah gene in Cryphonectria parasitica, the chestnut blight fungus, reduces the ability of the fungus to form cankers on chestnut trees, suggesting that OAH plays a key role in virulence. OAH was produced in Escherichia coli and purified, and its catalytic rates were determined. Oxalacetate is the main OAH substrate, but the enzyme also acts as a lyase of (2R,3S)-dimethyl malate with approximately 1000-fold lower efficacy. The crystal structure of OAH was determined alone, in complex with a mechanism-based inhibitor, 3,3-difluorooxalacetate (DFOA), and in complex with the reaction product, oxalate, to a resolution limit of 1.30, 1.55, and 1.65 A, respectively. OAH assembles into a dimer of dimers with each subunit exhibiting an (alpha/beta)(8) barrel fold and each pair swapping the 8th alpha-helix. An active site "gating loop" exhibits conformational disorder in the ligand-free structure. To obtain the structures of the OAH.ligand complexes, the ligand-free OAH crystals were soaked briefly with DFOA or oxalacetate. DFOA binding leads to ordering of the gating loop in a conformation that sequesters the ligand from the solvent. DFOA binds in a gem-diol form analogous to the oxalacetate intermediate/transition state. Oxalate binds in a planar conformation, but the gating loop is largely disordered. Comparison between the OAH structure and that of the closely related enzyme, 2,3-dimethylmalate lyase, suggests potential determinants of substrate preference.

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Year:  2010        PMID: 20558740      PMCID: PMC2924111          DOI: 10.1074/jbc.M110.117804

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  38 in total

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2.  The crystal structure of the first enzyme in the pantothenate biosynthetic pathway, ketopantoate hydroxymethyltransferase, from M tuberculosis.

Authors:  Barnali N Chaudhuri; Michael R Sawaya; Chang Yub Kim; Geoff S Waldo; Min S Park; Thomas C Terwilliger; Todd O Yeates
Journal:  Structure       Date:  2003-07       Impact factor: 5.006

3.  Crystal structure of the petal death protein from carnation flower.

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Journal:  Biochemistry       Date:  2005-12-20       Impact factor: 3.162

4.  Crystal structures of 2-methylisocitrate lyase in complex with product and with isocitrate inhibitor provide insight into lyase substrate specificity, catalysis and evolution.

Authors:  Sijiu Liu; Zhibing Lu; Yin Han; Eugene Melamud; Debra Dunaway-Mariano; Osnat Herzberg
Journal:  Biochemistry       Date:  2005-03-01       Impact factor: 3.162

5.  Oxalate production by Sclerotinia sclerotiorum deregulates guard cells during infection.

Authors:  Rejane L Guimarães; Henrik U Stotz
Journal:  Plant Physiol       Date:  2004-10-22       Impact factor: 8.340

6.  Conformational flexibility of PEP mutase.

Authors:  Sijiu Liu; Zhibing Lu; Ying Han; Yong Jia; Andrew Howard; Debra Dunaway-Mariano; Osnat Herzberg
Journal:  Biochemistry       Date:  2004-04-20       Impact factor: 3.162

7.  Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member.

Authors:  Buvaneswari Narayanan; Weiling Niu; Henk-Jan Joosten; Zhimin Li; Remko K P Kuipers; Peter J Schaap; Debra Dunaway-Mariano; Osnat Herzberg
Journal:  J Mol Biol       Date:  2008-12-24       Impact factor: 5.469

8.  Refined crystal structure of troponin C from turkey skeletal muscle at 2.0 A resolution.

Authors:  O Herzberg; M N James
Journal:  J Mol Biol       Date:  1988-10-05       Impact factor: 5.469

9.  Structure of E. coli ketopantoate hydroxymethyl transferase complexed with ketopantoate and Mg2+, solved by locating 160 selenomethionine sites.

Authors:  Frank von Delft; Tsuyoshi Inoue; S Adrian Saldanha; Harald H Ottenhof; Florian Schmitzberger; Louise M Birch; Venugopal Dhanaraj; Michael Witty; Alison G Smith; Tom L Blundell; Chris Abell
Journal:  Structure       Date:  2003-08       Impact factor: 5.006

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  13 in total

Review 1.  Cryphonectria parasitica, the causal agent of chestnut blight: invasion history, population biology and disease control.

Authors:  Daniel Rigling; Simone Prospero
Journal:  Mol Plant Pathol       Date:  2017-04-24       Impact factor: 5.663

2.  Soluble material secreted from Penicillium chrysogenum isolate exhibits antifungal activity against Cryphonectria parasitica- the causative agent of the American Chestnut Blight.

Authors:  Aleksandr Florjanczyk; Rebecca Barnes; Adam Kenney; Joseph Horzempa
Journal:  J Plant Pathol Microbiol       Date:  2016-04-30

Review 3.  Developing Blight-Tolerant American Chestnut Trees.

Authors:  William A Powell; Andrew E Newhouse; Vernon Coffey
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-07-01       Impact factor: 10.005

4.  Comparisons of ectomycorrhizal colonization of transgenic american chestnut with those of the wild type, a conventionally bred hybrid, and related fagaceae species.

Authors:  Katherine M D'Amico; Thomas R Horton; Charles A Maynard; Stephen V Stehman; Allison D Oakes; William A Powell
Journal:  Appl Environ Microbiol       Date:  2014-10-17       Impact factor: 4.792

5.  Bacterial quorum sensing, cooperativity, and anticipation of stationary-phase stress.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-12       Impact factor: 11.205

6.  A threshold level of oxalate oxidase transgene expression reduces Cryphonectria parasitica-induced necrosis in a transgenic American chestnut (Castanea dentata) leaf bioassay.

Authors:  Bo Zhang; Allison D Oakes; Andrew E Newhouse; Kathleen M Baier; Charles A Maynard; William A Powell
Journal:  Transgenic Res       Date:  2013-03-31       Impact factor: 2.788

7.  Determining the Biochemical Properties of the Oxalate Biosynthetic Component (Obc)1 from Burkholderia mallei.

Authors:  Peter M Lambert; Paul A Nakata
Journal:  PLoS One       Date:  2016-09-19       Impact factor: 3.240

8.  The MAPK kinase BcMkk1 suppresses oxalic acid biosynthesis via impeding phosphorylation of BcRim15 by BcSch9 in Botrytis cinerea.

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Journal:  PLoS Pathog       Date:  2018-09-13       Impact factor: 6.823

9.  Δ(1)-pyrroline-5-carboxylate/glutamate biogenesis is required for fungal virulence and sporulation.

Authors:  Ziting Yao; Chengwu Zou; Hui Zhou; Jinzi Wang; Lidan Lu; Yang Li; Baoshan Chen
Journal:  PLoS One       Date:  2013-09-09       Impact factor: 3.240

10.  Pseudomonas fluorescens ATCC 13525 containing an artificial oxalate operon and Vitreoscilla hemoglobin secretes oxalic acid and solubilizes rock phosphate in acidic alfisols.

Authors:  Kavita Yadav; Chanchal Kumar; G Archana; G Naresh Kumar
Journal:  PLoS One       Date:  2014-04-04       Impact factor: 3.240

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