Literature DB >> 20555364

Unraveling the viral tapestry (from inside the capsid out).

Shawn W Polson1, Steven W Wilhelm, K Eric Wommack.   

Abstract

Mesh：

Year:  2010        PMID： 20555364      PMCID： PMC3105704          DOI： 10.1038/ismej.2010.81

Source DB:  PubMed          Journal:  ISME J        ISSN： 1751-7362            Impact factor:   10.302


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  9 in total

1.  ACLAME: a CLAssification of Mobile genetic Elements.

Authors:  Raphaël Leplae; Aline Hebrant; Shoshana J Wodak; Ariane Toussaint
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  The Phage Proteomic Tree: a genome-based taxonomy for phage.

Authors:  Forest Rohwer; Rob Edwards
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

3.  Metagenomic analysis of coastal RNA virus communities.

Authors:  Alexander I Culley; Andrew S Lang; Curtis A Suttle
Journal:  Science       Date:  2006-06-23       Impact factor: 47.728

Review 4.  Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution.

Authors:  Graham F Hatfull; Steven G Cresawn; Roger W Hendrix
Journal:  Res Microbiol       Date:  2008-05-07       Impact factor: 3.992

5.  Global-scale processes with a nanoscale drive: the role of marine viruses.

Authors:  Corina P D Brussaard; Steven W Wilhelm; Frede Thingstad; Markus G Weinbauer; Gunnar Bratbak; Mikal Heldal; Susan A Kimmance; Mathias Middelboe; Keizo Nagasaki; John H Paul; Declan C Schroeder; Curtis A Suttle; Dolors Vaqué; K Eric Wommack
Journal:  ISME J       Date:  2008-04-03       Impact factor: 10.302

6.  High abundance of viruses found in aquatic environments.

Authors:  O Bergh; K Y Børsheim; G Bratbak; M Heldal
Journal:  Nature       Date:  1989-08-10       Impact factor: 49.962

7.  Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.

Authors:  W Fiers; R Contreras; F Duerinck; G Haegeman; D Iserentant; J Merregaert; W Min Jou; F Molemans; A Raeymaekers; A Van den Berghe; G Volckaert; M Ysebaert
Journal:  Nature       Date:  1976-04-08       Impact factor: 49.962

8.  The marine viromes of four oceanic regions.

Authors:  Florent E Angly; Ben Felts; Mya Breitbart; Peter Salamon; Robert A Edwards; Craig Carlson; Amy M Chan; Matthew Haynes; Scott Kelley; Hong Liu; Joseph M Mahaffy; Jennifer E Mueller; Jim Nulton; Robert Olson; Rachel Parsons; Steve Rayhawk; Curtis A Suttle; Forest Rohwer
Journal:  PLoS Biol       Date:  2006-11       Impact factor: 8.029

9.  The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.

Authors:  F Meyer; D Paarmann; M D'Souza; R Olson; E M Glass; M Kubal; T Paczian; A Rodriguez; R Stevens; A Wilke; J Wilkening; R A Edwards
Journal:  BMC Bioinformatics       Date:  2008-09-19       Impact factor: 3.169
  9 in total
  18 in total

1.  Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA.

Authors:  Rachel Marine; Shawn W Polson; Jacques Ravel; Graham Hatfull; Daniel Russell; Matthew Sullivan; Fraz Syed; Michael Dumas; K Eric Wommack
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

Review 2.  Diversity and Ecology of Viruses in Hyperarid Desert Soils.

Authors:  Olivier Zablocki; Evelien M Adriaenssens; Don Cowan
Journal:  Appl Environ Microbiol       Date:  2015-11-20       Impact factor: 4.792

3.  Amplification methods bias metagenomic libraries of uncultured single-stranded and double-stranded DNA viruses.

Authors:  Kyoung-Ho Kim; Jin-Woo Bae
Journal:  Appl Environ Microbiol       Date:  2011-09-16       Impact factor: 4.792

4.  Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses.

Authors:  Eric G Sakowski; Erik V Munsell; Mara Hyatt; William Kress; Shannon J Williamson; Daniel J Nasko; Shawn W Polson; K Eric Wommack
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

5.  Direct assessment of viral diversity in soils by random PCR amplification of polymorphic DNA.

Authors:  Sharath Srinivasiah; Jacqueline Lovett; Shawn Polson; Jaysheel Bhavsar; Dhritiman Ghosh; Krishnakali Roy; Jeffry J Fuhrmann; Mark Radosevich; K Eric Wommack
Journal:  Appl Environ Microbiol       Date:  2013-06-21       Impact factor: 4.792

6.  The Number of Target Molecules of the Amplification Step Limits Accuracy and Sensitivity in Ultradeep-Sequencing Viral Population Studies.

Authors:  Romain Gallet; Frédéric Fabre; Yannis Michalakis; Stéphane Blanc
Journal:  J Virol       Date:  2017-07-27       Impact factor: 5.103

7.  Finding a needle in the virus metagenome haystack--micro-metagenome analysis captures a snapshot of the diversity of a bacteriophage armoire.

Authors:  Jessica Ray; Michael Dondrup; Sejal Modha; Ida Helene Steen; Ruth-Anne Sandaa; Martha Clokie
Journal:  PLoS One       Date:  2012-04-11       Impact factor: 3.240

8.  Previously unknown evolutionary groups dominate the ssDNA gokushoviruses in oxic and anoxic waters of a coastal marine environment.

Authors:  Jessica M Labonté; Steven J Hallam; Curtis A Suttle
Journal:  Front Microbiol       Date:  2015-04-22       Impact factor: 5.640

9.  VIROME: a standard operating procedure for analysis of viral metagenome sequences.

Authors:  K Eric Wommack; Jaysheel Bhavsar; Shawn W Polson; Jing Chen; Michael Dumas; Sharath Srinivasiah; Megan Furman; Sanchita Jamindar; Daniel J Nasko
Journal:  Stand Genomic Sci       Date:  2012-07-27

10.  Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions.

Authors:  Cheryl-Emiliane T Chow; Danielle M Winget; Richard A White; Steven J Hallam; Curtis A Suttle
Journal:  Front Microbiol       Date:  2015-04-10       Impact factor: 5.640
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