Literature DB >> 20551991

Co-expression of FBN1 with mesenchyme-specific genes in mouse cell lines: implications for phenotypic variability in Marfan syndrome.

Kim M Summers1, Sobia Raza, Erik van Nimwegen, Thomas C Freeman, David A Hume.   

Abstract

Mutations in the human FBN1 gene cause Marfan syndrome, a complex disease affecting connective tissues but with a highly variable phenotype. To identify genes that might participate in epistatic interactions with FBN1, and could therefore explain the observed phenotypic variability, we have looked for genes that are co-expressed with Fbn1 in the mouse. Microarray expression data derived from a range of primary mouse cells and cell lines were analysed using the network analysis tool BioLayout Express(3D). A cluster of 205 genes, including Fbn1, were selectively expressed by mouse cell lines of different mesenchymal lineages and by mouse primary mesenchymal cells (preadipocytes, myoblasts, fibroblasts, osteoblasts). Promoter analysis of this gene set identified several candidate transcriptional regulators. Genes within this co-expressed cluster are candidate genetic modifiers for Marfan syndrome and for other connective tissue diseases.

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Year:  2010        PMID: 20551991      PMCID: PMC2987476          DOI: 10.1038/ejhg.2010.91

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  49 in total

1.  An integrated approach to management of Marfan syndrome caused by an FBN1 exon 18 mutation in an Australian Aboriginal family.

Authors:  K M Summers; D Xu; J A West; J J McGill; A Galbraith; C M Whight; S L Brocque; M Nataatmadja; L K Kong; J Dondey; D Stark; M J West
Journal:  Clin Genet       Date:  2004-01       Impact factor: 4.438

Review 2.  Mesenchymal stem cells: clinical applications and biological characterization.

Authors:  Frank P Barry; J Mary Murphy
Journal:  Int J Biochem Cell Biol       Date:  2004-04       Impact factor: 5.085

Review 3.  The mesenchymal cell, its role in the embryo, and the remarkable signaling mechanisms that create it.

Authors:  Elizabeth D Hay
Journal:  Dev Dyn       Date:  2005-07       Impact factor: 3.780

Review 4.  Complexity in interpretation of embryonic epithelial-mesenchymal transition in response to transforming growth factor-beta signaling.

Authors:  Shaheen Ahmed; Ali Nawshad
Journal:  Cells Tissues Organs       Date:  2007       Impact factor: 2.481

5.  Lysyl oxidase is essential for hypoxia-induced metastasis.

Authors:  Janine T Erler; Kevin L Bennewith; Monica Nicolau; Nadja Dornhöfer; Christina Kong; Quynh-Thu Le; Jen-Tsan Ashley Chi; Stefanie S Jeffrey; Amato J Giaccia
Journal:  Nature       Date:  2006-04-27       Impact factor: 49.962

Review 6.  Regulation of gene expression at the beginning of mammalian development and the TEAD family of transcription factors.

Authors:  K J Kaneko; M L DePamphilis
Journal:  Dev Genet       Date:  1998

7.  Identification and characterization of a gene encoding a gut-enriched Krüppel-like factor expressed during growth arrest.

Authors:  J M Shields; R J Christy; V W Yang
Journal:  J Biol Chem       Date:  1996-08-16       Impact factor: 5.157

8.  Fibrillins 1 and 2 perform partially overlapping functions during aortic development.

Authors:  Luca Carta; Lygia Pereira; Emilio Arteaga-Solis; Sui Y Lee-Arteaga; Brett Lenart; Barry Starcher; Christian A Merkel; Marina Sukoyan; Alexander Kerkis; Noriko Hazeki; Douglas R Keene; Lynn Y Sakai; Francesco Ramirez
Journal:  J Biol Chem       Date:  2005-12-28       Impact factor: 5.157

9.  Novel regulators of kidney development from the tips of the ureteric bud.

Authors:  Kai M Schmidt-Ott; Jun Yang; Xia Chen; Howard Wang; Neal Paragas; Kiyoshi Mori; Jau-Yi Li; Benson Lu; Frank Costantini; Mario Schiffer; Erwin Bottinger; Jonathan Barasch
Journal:  J Am Soc Nephrol       Date:  2005-05-25       Impact factor: 10.121

Review 10.  New insights into elastic fiber assembly.

Authors:  Jessica E Wagenseil; Robert P Mecham
Journal:  Birth Defects Res C Embryo Today       Date:  2007-12
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  16 in total

1.  Expression of mesenchyme-specific gene signatures by follicular dendritic cells: insights from the meta-analysis of microarray data from multiple mouse cell populations.

Authors:  Neil A Mabbott; J Kenneth Baillie; Atsushi Kobayashi; David S Donaldson; Hitoshi Ohmori; Sun-Ok Yoon; Arnold S Freedman; Tom C Freeman; Kim M Summers
Journal:  Immunology       Date:  2011-06-03       Impact factor: 7.397

2.  An integrative computational analysis provides evidence for FBN1-associated network deregulation in trisomy 21.

Authors:  Mireia Vilardell; Sergi Civit; Ralf Herwig
Journal:  Biol Open       Date:  2013-06-20       Impact factor: 2.422

3.  An expression atlas of human primary cells: inference of gene function from coexpression networks.

Authors:  Neil A Mabbott; J Kenneth Baillie; Helen Brown; Tom C Freeman; David A Hume
Journal:  BMC Genomics       Date:  2013-09-20       Impact factor: 3.969

4.  ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs.

Authors:  Piotr J Balwierz; Mikhail Pachkov; Phil Arnold; Andreas J Gruber; Mihaela Zavolan; Erik van Nimwegen
Journal:  Genome Res       Date:  2014-02-10       Impact factor: 9.043

5.  Coexpression analysis of large cancer datasets provides insight into the cellular phenotypes of the tumour microenvironment.

Authors:  Tamasin N Doig; David A Hume; Thanasis Theocharidis; John R Goodlad; Christopher D Gregory; Tom C Freeman
Journal:  BMC Genomics       Date:  2013-07-11       Impact factor: 3.969

6.  Computational modeling identifies key gene regulatory interactions underlying phenobarbital-mediated tumor promotion.

Authors:  Raphaëlle Luisier; Elif B Unterberger; Jay I Goodman; Michael Schwarz; Jonathan Moggs; Rémi Terranova; Erik van Nimwegen
Journal:  Nucleic Acids Res       Date:  2014-01-23       Impact factor: 16.971

7.  A gene expression atlas of the domestic pig.

Authors:  Tom C Freeman; Alasdair Ivens; J Kenneth Baillie; Dario Beraldi; Mark W Barnett; David Dorward; Alison Downing; Lynsey Fairbairn; Ronan Kapetanovic; Sobia Raza; Andru Tomoiu; Ramiro Alberio; Chunlei Wu; Andrew I Su; Kim M Summers; Christopher K Tuggle; Alan L Archibald; David A Hume
Journal:  BMC Biol       Date:  2012-11-15       Impact factor: 7.431

8.  Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions.

Authors:  Margaret R Davis; Robin Andersson; Jessica Severin; Michiel de Hoon; Nicolas Bertin; J Kenneth Baillie; Hideya Kawaji; Albin Sandelin; Alistair R R Forrest; Kim M Summers
Journal:  Mol Genet Metab       Date:  2013-12-16       Impact factor: 4.797

9.  Network analysis reveals distinct clinical syndromes underlying acute mountain sickness.

Authors:  David P Hall; Ian J C MacCormick; Alex T Phythian-Adams; Nina M Rzechorzek; David Hope-Jones; Sorrel Cosens; Stewart Jackson; Matthew G D Bates; David J Collier; David A Hume; Thomas Freeman; A A Roger Thompson; John Kenneth Baillie
Journal:  PLoS One       Date:  2014-01-22       Impact factor: 3.240

10.  Comparative Transcriptome Analysis Identifies CCDC80 as a Novel Gene Associated with Pulmonary Arterial Hypertension.

Authors:  Shota Sasagawa; Yuhei Nishimura; Hirofumi Sawada; Erquan Zhang; Shiko Okabe; Soichiro Murakami; Yoshifumi Ashikawa; Mizuki Yuge; Koki Kawaguchi; Reiko Kawase; Yoshihide Mitani; Kazuo Maruyama; Toshio Tanaka
Journal:  Front Pharmacol       Date:  2016-06-07       Impact factor: 5.810

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