Literature DB >> 20544879

A compendium of human mitochondrial gene expression machinery with links to disease.

Timothy E Shutt1, Gerald S Shadel.   

Abstract

Mammalian mitochondrial DNA encodes 37 essential genes required for ATP production via oxidative phosphorylation, instability or misregulation of which is associated with human diseases and aging. Other than the mtDNA-encoded RNA species (13 mRNAs, 12S and 16S rRNAs, and 22 tRNAs), the remaining factors needed for mitochondrial gene expression (i.e., transcription, RNA processing/modification, and translation), including a dedicated set of mitochondrial ribosomal proteins, are products of nuclear genes that are imported into the mitochondrial matrix. Herein, we inventory the human mitochondrial gene expression machinery, and, while doing so, we highlight specific associations of these regulatory factors with human disease. Major new breakthroughs have been made recently in this burgeoning area that set the stage for exciting future studies on the key outstanding issue of how mitochondrial gene expression is regulated differentially in vivo. This should promote a greater understanding of why mtDNA mutations and dysfunction cause the complex and tissue-specific pathology characteristic of mitochondrial disease states and how mitochondrial dysfunction contributes to more common human pathology and aging.

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Year:  2010        PMID: 20544879      PMCID: PMC2886302          DOI: 10.1002/em.20571

Source DB:  PubMed          Journal:  Environ Mol Mutagen        ISSN: 0893-6692            Impact factor:   3.216


  225 in total

1.  Identification of a novel human nuclear-encoded mitochondrial poly(A) polymerase.

Authors:  Rafal Tomecki; Aleksandra Dmochowska; Kamil Gewartowski; Andrzej Dziembowski; Piotr P Stepien
Journal:  Nucleic Acids Res       Date:  2004-11-16       Impact factor: 16.971

2.  Homologs of mitochondrial transcription factor B, sparsely distributed within the eukaryotic radiation, are likely derived from the dimethyladenosine methyltransferase of the mitochondrial endosymbiont.

Authors:  Timothy E Shutt; Michael W Gray
Journal:  Mol Biol Evol       Date:  2006-03-13       Impact factor: 16.240

3.  A 22 kDa protein specific for yeast mitochondrial nucleoids is an unidentified putative ribosomal protein encoded in open reading frame YGL068W.

Authors:  H Sato; I Miyakawa
Journal:  Protoplasma       Date:  2004-06-22       Impact factor: 3.356

4.  A single mammalian mitochondrial translation initiation factor functionally replaces two bacterial factors.

Authors:  Rahul Gaur; Domenick Grasso; Partha P Datta; P D V Krishna; Gautam Das; Angela Spencer; Rajendra K Agrawal; Linda Spremulli; Umesh Varshney
Journal:  Mol Cell       Date:  2008-02-01       Impact factor: 17.970

5.  Mitochondrial genes as sites of primary action of steroid hormones.

Authors:  C V Demonacos; N Karayanni; E Hatzoglou; C Tsiriyiotis; D A Spandidos; C E Sekeris
Journal:  Steroids       Date:  1996-04       Impact factor: 2.668

6.  Binding of the human homolog of the Drosophila discs large tumor suppressor protein to the mitochondrial ribosomal protein MRP-S34.

Authors:  Fumiaki Ogawa; Shungo Adachi; Kazuyoshi Kohu; Kenjiro Shige; Tetsu Akiyama
Journal:  Biochem Biophys Res Commun       Date:  2003-01-17       Impact factor: 3.575

7.  The m-AAA protease defective in hereditary spastic paraplegia controls ribosome assembly in mitochondria.

Authors:  Mark Nolden; Sarah Ehses; Mirko Koppen; Andrea Bernacchia; Elena I Rugarli; Thomas Langer
Journal:  Cell       Date:  2005-10-21       Impact factor: 41.582

8.  The Drosophila termination factor DmTTF regulates in vivo mitochondrial transcription.

Authors:  Marina Roberti; Francesco Bruni; Paola Loguercio Polosa; Maria Nicola Gadaleta; Palmiro Cantatore
Journal:  Nucleic Acids Res       Date:  2006-04-28       Impact factor: 16.971

9.  A novel nuclear-encoded mitochondrial poly(A) polymerase PAPD1 is a potential candidate gene for the extreme obesity related phenotypes in mammals.

Authors:  Qianjun Xiao; Xiao-Lin Wu; Jennifer J Michal; Jerry J Reeves; Jan R Busboom; Gary H Thorgaard; Zhihua Jiang
Journal:  Int J Biol Sci       Date:  2006-05-18       Impact factor: 6.580

10.  Role of mitochondrial glucocorticoid receptor in glucocorticoid-induced apoptosis.

Authors:  Ronit Vogt Sionov; Orly Cohen; Shlomit Kfir; Yael Zilberman; Eitan Yefenof
Journal:  J Exp Med       Date:  2006-01-03       Impact factor: 14.307

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  46 in total

Review 1.  Hitting the brakes: termination of mitochondrial transcription.

Authors:  Kip E Guja; Miguel Garcia-Diaz
Journal:  Biochim Biophys Acta       Date:  2011-11-25

2.  Transcriptional changes of mitochondrial genes in irradiated cells proficient or deficient in p53.

Authors:  M Ahmad Chaudhry; Romaica A Omaruddin
Journal:  J Genet       Date:  2012       Impact factor: 1.166

3.  Mitochondrial ribosomal protein L12 selectively associates with human mitochondrial RNA polymerase to activate transcription.

Authors:  Yulia V Surovtseva; Timothy E Shutt; Justin Cotney; Huseyin Cimen; Sophia Y Chen; Emine C Koc; Gerald S Shadel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-14       Impact factor: 11.205

4.  Fatty liver is associated with reduced SIRT3 activity and mitochondrial protein hyperacetylation.

Authors:  Agnieszka A Kendrick; Mahua Choudhury; Shaikh M Rahman; Carrie E McCurdy; Marisa Friederich; Johan L K Van Hove; Peter A Watson; Nicholas Birdsey; Jianjun Bao; David Gius; Michael N Sack; Enxuan Jing; C Ronald Kahn; Jacob E Friedman; Karen R Jonscher
Journal:  Biochem J       Date:  2011-02-01       Impact factor: 3.857

5.  Mitochondrial tRNA-serine (AGY) m.C12264T mutation causes severe multisystem disease with cataracts.

Authors:  Samantha A Schrier; Lee-Jun Wong; Emily Place; Jack Q Ji; Eric A Pierce; Jeffrey Golden; Mariarita Santi; William Anninger; Marni J Falk
Journal:  Discov Med       Date:  2012-02       Impact factor: 2.970

6.  Mitochondrial genome instability and ROS enhance intestinal tumorigenesis in APC(Min/+) mice.

Authors:  Dong Kyun Woo; Paula D Green; Janine H Santos; Anthony D D'Souza; Zenta Walther; W David Martin; Brooke E Christian; Navdeep S Chandel; Gerald S Shadel
Journal:  Am J Pathol       Date:  2011-11-03       Impact factor: 4.307

7.  Spatial distribution of cellular function: the partitioning of proteins between mitochondria and the nucleus in MCF7 breast cancer cells.

Authors:  Amal T Qattan; Marko Radulovic; Mark Crawford; Jasminka Godovac-Zimmermann
Journal:  J Proteome Res       Date:  2012-11-08       Impact factor: 4.466

8.  Somatic mutations throughout the entire mitochondrial genome are associated with elevated PSA levels in prostate cancer patients.

Authors:  Anita Kloss-Brandstätter; Georg Schäfer; Gertraud Erhart; Alexander Hüttenhofer; Stefan Coassin; Christof Seifarth; Monika Summerer; Jasmin Bektic; Helmut Klocker; Florian Kronenberg
Journal:  Am J Hum Genet       Date:  2010-12-10       Impact factor: 11.025

Review 9.  AMPK: implications in osteoarthritis and therapeutic targets.

Authors:  Junjie Wang; Jiali Li; Deye Song; Jiangdong Ni; Muliang Ding; Jun Huang; Mingming Yan
Journal:  Am J Transl Res       Date:  2020-12-15       Impact factor: 4.060

10.  Oral contraceptives and nicotine synergistically exacerbate cerebral ischemic injury in the female brain.

Authors:  Ami P Raval; Raquel Borges-Garcia; Francisca Diaz; Thomas J Sick; Helen Bramlett
Journal:  Transl Stroke Res       Date:  2013-02-13       Impact factor: 6.829

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