Literature DB >> 20541451

Genetic perspectives on crop domestication.

Briana L Gross1, Kenneth M Olsen.   

Abstract

The process of crop domestication has long been a topic of active research for biologists, anthropologists and others. Genetic data have proved a powerful resource for drawing inferences on questions regarding the geographical origins of crops, the numbers of independent domestication events for a given crop species, the specific molecular changes underlying domestication traits, and the nature of artificial selection during domestication and subsequent crop improvement. We would argue that these genetic inferences are fundamentally compatible with recent archaeological data that support a view of domestication as a geographically diffuse, gradual process. In this review, we summarize methodologies ranging from quantitative trait locus mapping to resequencing used in genetic analyses of crop evolution. We also highlight recent major insights regarding the timing and spatial patterning of crop domestication and the distinct genetic underpinnings of domestication, diversification and improvement traits. 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20541451      PMCID: PMC2939243          DOI: 10.1016/j.tplants.2010.05.008

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  102 in total

1.  Green revolution: a mutant gibberellin-synthesis gene in rice.

Authors:  A Sasaki; M Ashikari; M Ueguchi-Tanaka; H Itoh; A Nishimura; D Swapan; K Ishiyama; T Saito; M Kobayashi; G S Khush; H Kitano; M Matsuoka
Journal:  Nature       Date:  2002-04-18       Impact factor: 49.962

2.  An SNP caused loss of seed shattering during rice domestication.

Authors:  Saeko Konishi; Takeshi Izawa; Shao Yang Lin; Kaworu Ebana; Yoshimichi Fukuta; Takuji Sasaki; Masahiro Yano
Journal:  Science       Date:  2006-04-13       Impact factor: 47.728

3.  Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes.

Authors:  Kai-Yi Chen; Bin Cong; Rod Wing; Julia Vrebalov; Steven D Tanksley
Journal:  Science       Date:  2007-10-26       Impact factor: 47.728

Review 4.  The nature of selection during plant domestication.

Authors:  Michael D Purugganan; Dorian Q Fuller
Journal:  Nature       Date:  2009-02-12       Impact factor: 49.962

5.  Deletion in a gene associated with grain size increased yields during rice domestication.

Authors:  Ayahiko Shomura; Takeshi Izawa; Kaworu Ebana; Takeshi Ebitani; Hiromi Kanegae; Saeko Konishi; Masahiro Yano
Journal:  Nat Genet       Date:  2008-07-06       Impact factor: 38.330

6.  Control of rice grain-filling and yield by a gene with a potential signature of domestication.

Authors:  Ertao Wang; Jianjun Wang; Xudong Zhu; Wei Hao; Linyou Wang; Qun Li; Lixia Zhang; Wei He; Baorong Lu; Hongxuan Lin; Hong Ma; Guiquan Zhang; Zuhua He
Journal:  Nat Genet       Date:  2008-09-28       Impact factor: 38.330

7.  Molecular insights into the evolution of crop plants.

Authors:  Jutta C Burger; Mark A Chapman; John M Burke
Journal:  Am J Bot       Date:  2008-02       Impact factor: 3.844

8.  The hitch-hiking effect of a favourable gene.

Authors:  J M Smith; J Haigh
Journal:  Genet Res       Date:  1974-02       Impact factor: 1.588

Review 9.  The molecular genetics of crop domestication.

Authors:  John F Doebley; Brandon S Gaut; Bruce D Smith
Journal:  Cell       Date:  2006-12-29       Impact factor: 41.582

10.  The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp.

Authors:  Tsutomu Furukawa; Masahiko Maekawa; Tomoyuki Oki; Ikuo Suda; Shigeru Iida; Hiroaki Shimada; Itsuro Takamure; Koh-ichi Kadowaki
Journal:  Plant J       Date:  2006-12-06       Impact factor: 6.417

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  100 in total

1.  Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.).

Authors:  Guanjing Hu; Jin Koh; Mi-Jeong Yoo; Dharminder Pathak; Sixue Chen; Jonathan F Wendel
Journal:  Planta       Date:  2014-08-26       Impact factor: 4.116

2.  Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication.

Authors:  Maojun Wang; Lili Tu; Min Lin; Zhongxu Lin; Pengcheng Wang; Qingyong Yang; Zhengxiu Ye; Chao Shen; Jianying Li; Lin Zhang; Xiaolin Zhou; Xinhui Nie; Zhonghua Li; Kai Guo; Yizan Ma; Cong Huang; Shuangxia Jin; Longfu Zhu; Xiyan Yang; Ling Min; Daojun Yuan; Qinghua Zhang; Keith Lindsey; Xianlong Zhang
Journal:  Nat Genet       Date:  2017-03-06       Impact factor: 38.330

Review 3.  The timetable for allopolyploidy in flowering plants.

Authors:  Donald A Levin
Journal:  Ann Bot       Date:  2013-08-21       Impact factor: 4.357

4.  Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato.

Authors:  Daniel Koenig; José M Jiménez-Gómez; Seisuke Kimura; Daniel Fulop; Daniel H Chitwood; Lauren R Headland; Ravi Kumar; Michael F Covington; Upendra Kumar Devisetty; An V Tat; Takayuki Tohge; Anthony Bolger; Korbinian Schneeberger; Stephan Ossowski; Christa Lanz; Guangyan Xiong; Mallorie Taylor-Teeples; Siobhan M Brady; Markus Pauly; Detlef Weigel; Björn Usadel; Alisdair R Fernie; Jie Peng; Neelima R Sinha; Julin N Maloof
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-26       Impact factor: 11.205

5.  Archaeological and genetic insights into the origins of domesticated rice.

Authors:  Briana L Gross; Zhijun Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

6.  A genome-wide scan of selective sweeps and association mapping of fruit traits using microsatellite markers in watermelon.

Authors:  Umesh K Reddy; Lavanya Abburi; Venkata Lakshmi Abburi; Thangasamy Saminathan; Robert Cantrell; Venkata Gopinath Vajja; Rishi Reddy; Yan R Tomason; Amnon Levi; Todd C Wehner; Padma Nimmakayala
Journal:  J Hered       Date:  2014-11-25       Impact factor: 2.645

Review 7.  On the 'lost' crops of the neolithic Near East.

Authors:  Shahal Abbo; Simcha Lev-Yadun; Manfred Heun; Avi Gopher
Journal:  J Exp Bot       Date:  2013-02       Impact factor: 6.992

8.  Genomic analyses provide insights into the history of tomato breeding.

Authors:  Tao Lin; Guangtao Zhu; Junhong Zhang; Xiangyang Xu; Qinghui Yu; Zheng Zheng; Zhonghua Zhang; Yaoyao Lun; Shuai Li; Xiaoxuan Wang; Zejun Huang; Junming Li; Chunzhi Zhang; Taotao Wang; Yuyang Zhang; Aoxue Wang; Yancong Zhang; Kui Lin; Chuanyou Li; Guosheng Xiong; Yongbiao Xue; Andrea Mazzucato; Mathilde Causse; Zhangjun Fei; James J Giovannoni; Roger T Chetelat; Dani Zamir; Thomas Städler; Jingfu Li; Zhibiao Ye; Yongchen Du; Sanwen Huang
Journal:  Nat Genet       Date:  2014-10-12       Impact factor: 38.330

9.  Transcriptome comparison reveals the patterns of selection in domesticated and wild ramie (Boehmeria nivea L. Gaud).

Authors:  Touming Liu; Shouwei Tang; Siyuan Zhu; Qingming Tang; Xia Zheng
Journal:  Plant Mol Biol       Date:  2014-06-17       Impact factor: 4.076

10.  Cotton domestication: dramatic changes in a single cell.

Authors:  Briana L Gross; Jared L Strasburg
Journal:  BMC Biol       Date:  2010-11-15       Impact factor: 7.431

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