Literature DB >> 20535564

A simple and effective sample preparation method for atomic force microscopy visualization of individual DNA molecules in situ.

Xin-Cheng Shen1, Lei Bao, Zhi-Ling Zhang, Xiaoshen Liu, Dai-Wen Pang, Jianrong Xu.   

Abstract

A simple, controllable and effective sample preparation method was established for atomic force microscopy (AFM) imaging of individual DNA molecules in aqueous solution. Firstly, magnesium ion (Mg(2+)) at a concentration of 5.0-10.0 mM as a positively charged bridge was transferred onto mica to immobilize DNA molecules. Then Mg(2+)-modified mica was used to investigate DNA molecules in any buffer without magnesium ion by AFM. AFM images demonstrated that DNA molecules can be successfully observed in solution with good resolution, reproducibility, and stability. Further, this DNA sample preparation method makes AFM successful to investigate DNA molecular interaction in situ and DNA/chitosan complex in gene delivery.

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Year:  2010        PMID: 20535564     DOI: 10.1007/s11033-010-0190-3

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  15 in total

1.  DNA toroids: stages in condensation.

Authors:  R Golan; L I Pietrasanta; W Hsieh; H G Hansma
Journal:  Biochemistry       Date:  1999-10-19       Impact factor: 3.162

Review 2.  Surface biology of DNA by atomic force microscopy.

Authors:  H G Hansma
Journal:  Annu Rev Phys Chem       Date:  2001       Impact factor: 12.703

3.  Structure of transfection-active histone H1/DNA complexes.

Authors:  H Lucius; A Haberland; S Zaitsev; R Dallüge; M Schneider; M Böttger
Journal:  Mol Biol Rep       Date:  2001       Impact factor: 2.316

Review 4.  Scanning tunneling microscopy of nucleic acids.

Authors:  P G Arscott; V A Bloomfield
Journal:  Methods Enzymol       Date:  1992       Impact factor: 1.600

5.  Structural appearance of linker histone H1/siRNA complexes.

Authors:  Annekathrin Haberland; Sergei Zaitsev; Norbert Waldöfner; Bettina Erdmann; Michael Böttger; Wolfgang Henke
Journal:  Mol Biol Rep       Date:  2008-06-20       Impact factor: 2.316

6.  High order DNA structure as inferred by optical fluorimetry and scanning calorimetry.

Authors:  C Nicolini; S Carrara; G Mascetti
Journal:  Mol Biol Rep       Date:  1997-11       Impact factor: 2.316

7.  Interaction of histone H1 with superhelical DNA. Conformational studies and influence of ionic strength.

Authors:  M Böttger; C U von Mickwitz; S Scherneck; R Lindigkeit
Journal:  Mol Biol Rep       Date:  1984-07       Impact factor: 2.316

8.  High-resolution atomic-force microscopy of DNA: the pitch of the double helix.

Authors:  J Mou; D M Czajkowsky; Y Zhang; Z Shao
Journal:  FEBS Lett       Date:  1995-09-11       Impact factor: 4.124

9.  Atomic force microscopy imaging of DNA covalently immobilized on a functionalized mica substrate.

Authors:  L S Shlyakhtenko; A A Gall; J J Weimer; D D Hawn; Y L Lyubchenko
Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

10.  Visible light-induced plasmid DNA damage catalyzed by a CdSe/ZnS-photosensitized nano-TiO2 film.

Authors:  Xin-Cheng Shen; Zhi-Ling Zhang; Bo Zhou; Jun Peng; Min Xie; Min Zhang; Dai-Wen Pang
Journal:  Environ Sci Technol       Date:  2008-07-15       Impact factor: 9.028

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  2 in total

1.  Visualization of recombinant DNA and protein complexes using atomic force microscopy.

Authors:  Patrick J M Murphy; Morgan Shannon; John Goertz
Journal:  J Vis Exp       Date:  2011-07-18       Impact factor: 1.355

2.  Complexation in Aqueous Solution of a Hydrophobic Polyanion (PSSNa) Bearing Different Charge Densities with a Hydrophilic Polycation (PDADMAC).

Authors:  Nouha Jemili; Martin Fauquignon; Etienne Grau; Nicolas Fatin-Rouge; François Dole; Jean-Paul Chapel; Wafa Essafi; Christophe Schatz
Journal:  Polymers (Basel)       Date:  2022-06-14       Impact factor: 4.967

  2 in total

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