Literature DB >> 20532565

Molecular cytogenetic investigation of chromosome composition and transmission in sugarcane.

George Piperidis1, Nathalie Piperidis, Angélique D'Hont.   

Abstract

Modern sugarcane cultivars (Saccharum spp., 2n = 100-120) are complex polyploids derived from interspecific hybridization performed a century ago between the sugar-producing species S. officinarum L. and the wild species S. spontaneum L. Using genomic in situ hybridization, we revealed that between 15 and 27.5% of the genome of modern cultivars is derived from S. spontaneum, including 10-23% of entire chromosomes from this wild species and 8-13% chromosomes derived from interspecific recombination. We confirmed the occurrence of 2n + n transmission in crosses and first backcrosses between these two species and demonstrated that this also can occur in crosses between S. officinarum and modern cultivars. We analysed five S. officinarum clones with more than 80 chromosomes and demonstrated that they were derived from interspecific hybridization supporting the classical view that this species is characterized by 2n = 80. We also illustrated the complementarities between molecular cytogenetics and genetic mapping approaches for analysing complex genomes.

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Year:  2010        PMID: 20532565     DOI: 10.1007/s00438-010-0546-3

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  20 in total

1.  Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane.

Authors:  M Rossi; P G Araujo; F Paulet; O Garsmeur; V M Dias; H Chen; M-A Van Sluys; A D'Hont
Journal:  Mol Genet Genomics       Date:  2003-05-06       Impact factor: 3.291

2.  QTL analysis in a complex autopolyploid: genetic control of sugar content in sugarcane.

Authors:  R Ming; S C Liu; P H Moore; J E Irvine; A H Paterson
Journal:  Genome Res       Date:  2001-12       Impact factor: 9.043

3.  Molecular contribution to selection of intergeneric hybrids between sugarcane and the wild species Erianthus arundinaceus.

Authors:  G Piperidis; M J Christopher; B J Carroll; N Berding; A D'Hont
Journal:  Genome       Date:  2000-12       Impact factor: 2.166

4.  Molecular dissection of complex traits in autopolyploids: mapping QTLs affecting sugar yield and related traits in sugarcane.

Authors:  R. Ming; -W. Wang; X. Draye; H. Moore; E. Irvine; H. Paterson
Journal:  Theor Appl Genet       Date:  2002-05-18       Impact factor: 5.699

5.  Cloning and characterization of ribosomal RNA genes from wheat and barley.

Authors:  W L Gerlach; J R Bedbrook
Journal:  Nucleic Acids Res       Date:  1979-12-11       Impact factor: 16.971

6.  Genetic mapping in sugarcane, a high polyploid, using bi-parental progeny: identification of a gene controlling stalk colour and a new rust resistance gene.

Authors:  L-M Raboin; K M Oliveira; L Lecunff; H Telismart; D Roques; M Butterfield; J-Y Hoarau; A D'Hont
Journal:  Theor Appl Genet       Date:  2006-03-22       Impact factor: 5.699

7.  Characterisation of the double genome structure of modern sugarcane cultivars (Saccharum spp.) by molecular cytogenetics.

Authors:  A D'Hont; L Grivet; P Feldmann; S Rao; N Berding; J C Glaszmann
Journal:  Mol Gen Genet       Date:  1996-03-07

8.  Identification and characterisation of sugarcane intergeneric hybrids, Saccharum officinarum x Erianthus arundinaceus, with molecular markers and DNA in situ hybridisation.

Authors:  A D'Hont; P S Rao; P Feldmann; L Grivet; N Islam-Faridi; P Taylor; J C Glaszmann
Journal:  Theor Appl Genet       Date:  1995-07       Impact factor: 5.699

9.  Orthologous comparison in a gene-rich region among grasses reveals stability in the sugarcane polyploid genome.

Authors:  Nazeema Jannoo; Laurent Grivet; Nathalie Chantret; Olivier Garsmeur; Jean Christophe Glaszmann; Paulo Arruda; Angélique D'Hont
Journal:  Plant J       Date:  2007-04-08       Impact factor: 6.417

10.  Oligoclonal interspecific origin of 'North Indian' and 'Chinese' sugarcanes.

Authors:  Angélique D'Hont; Florence Paulet; Jean Christophe Glaszmann
Journal:  Chromosome Res       Date:  2002       Impact factor: 5.239

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  47 in total

1.  High-throughput assessment of transgene copy number in sugarcane using real-time quantitative PCR.

Authors:  Rosanne E Casu; Alexandra Selivanova; Jai M Perroux
Journal:  Plant Cell Rep       Date:  2011-09-28       Impact factor: 4.570

2.  A genome-wide BAC end-sequence survey of sugarcane elucidates genome composition, and identifies BACs covering much of the euchromatin.

Authors:  Changsoo Kim; Tae-Ho Lee; Rosana O Compton; Jon S Robertson; Gary J Pierce; Andrew H Paterson
Journal:  Plant Mol Biol       Date:  2012-11-16       Impact factor: 4.076

3.  Diversity of sequences and expression patterns among alleles of a sugarcane loading stem gene.

Authors:  Richard L Moyle; Robert G Birch
Journal:  Theor Appl Genet       Date:  2013-04-02       Impact factor: 5.699

4.  Species-specific abundant retrotransposons elucidate the genomic composition of modern sugarcane cultivars.

Authors:  Yongji Huang; Hong Chen; Jinlei Han; Ya Zhang; Shulin Ma; Guangrun Yu; Zonghua Wang; Kai Wang
Journal:  Chromosoma       Date:  2019-12-17       Impact factor: 4.316

5.  Isolation, characterization and expression analysis of stress responsive plant nuclear transcriptional factor subunit (NF-YB2) from commercial Saccharum hybrid and wild relative Erianthus arundinaceus.

Authors:  Swathik Clarancia Peter; Naveenarani Murugan; Manoj Vadakkancherry Mohanan; Sarath Padmanabhan Thelakat Sasikumar; Dharshini Selvarajan; Ashwin Narayan Jayanarayanan; Suresha G Shivalingamurthy; Mahadevaiah Chennappa; Valarmathi Ramanathan; Hemaprabha Govindakurup; Bakshi Ram; Appunu Chinnaswamy
Journal:  3 Biotech       Date:  2020-06-14       Impact factor: 2.406

6.  Single strand conformation polymorphism of genomic and EST-SSRs marker and its utility in genetic evaluation of sugarcane.

Authors:  Sachin B Kalwade; Rachayya M Devarumath
Journal:  Physiol Mol Biol Plants       Date:  2014-05-28

7.  Development of an Axiom Sugarcane100K SNP array for genetic map construction and QTL identification.

Authors:  Qian You; Xiping Yang; Ze Peng; Md Sariful Islam; Sushma Sood; Ziliang Luo; Jack Comstock; Liping Xu; Jianping Wang
Journal:  Theor Appl Genet       Date:  2019-07-18       Impact factor: 5.699

8.  Molecular insights into the origin of the brown rust resistance gene Bru1 among Saccharum species.

Authors:  Heng-Bo Wang; Ping-Hua Chen; Yan-Qing Yang; Angelique D'Hont; Yun-Hai Lu
Journal:  Theor Appl Genet       Date:  2017-08-18       Impact factor: 5.699

9.  Application of droplet digital PCR to determine copy number of endogenous genes and transgenes in sugarcane.

Authors:  Yue Sun; Priya Aiyar Joyce
Journal:  Plant Cell Rep       Date:  2017-08-28       Impact factor: 4.570

10.  Characterization of a Saccharum spontaneum with a basic chromosome number of x = 10 provides new insights on genome evolution in genus Saccharum.

Authors:  Zhuang Meng; Jinlei Han; Yujing Lin; Yiyong Zhao; Qingfang Lin; Xiaokai Ma; Jianping Wang; Muqing Zhang; Liangsheng Zhang; Qinghui Yang; Kai Wang
Journal:  Theor Appl Genet       Date:  2019-10-05       Impact factor: 5.699

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