Literature DB >> 20532374

Blunt-ended DNA stacking interactions in a 3-helix motif.

Risheng Wang1, Akinori Kuzuya, Wenyan Liu, Nadrian C Seeman.   

Abstract

We demonstrate that intermolecular stacking is capable of forming one-dimensional arrays of a blunt-ended 3-helix DNA motif. The array can be visualized in the atomic force microscopy through conjugated streptavidin nanoparticles. We estimate the strength of the triple stacking interaction to be -8.6 kcal mol(-1).

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Year:  2010        PMID： 20532374      PMCID： PMC3454654          DOI： 10.1039/c0cc01167c

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  12 in total

1.  A robust DNA mechanical device controlled by hybridization topology.

Authors:  Hao Yan; Xiaoping Zhang; Zhiyong Shen; Nadrian C Seeman
Journal:  Nature       Date:  2002-01-03       Impact factor: 49.962

2.  A novel single-molecule study to determine protein--protein association constants.

Authors:  G C Ratcliff; D A Erie
Journal:  J Am Chem Soc       Date:  2001-06-20       Impact factor: 15.419

3.  DNA-templated self-assembly of protein and nanoparticle linear arrays.

Authors:  Hanying Li; Sung Ha Park; John H Reif; Thomas H LaBean; Hao Yan
Journal:  J Am Chem Soc       Date:  2004-01-21       Impact factor: 15.419

Review 4.  DNA in a material world.

Authors:  Nadrian C Seeman
Journal:  Nature       Date:  2003-01-23       Impact factor: 49.962

5.  Synthesis from DNA of a molecule with the connectivity of a cube.

Authors:  J H Chen; N C Seeman
Journal:  Nature       Date:  1991-04-18       Impact factor: 49.962

6.  Architecture with GIDEON, a program for design in structural DNA nanotechnology.

Authors:  Jeffrey J Birac; William B Sherman; Jens Kopatsch; Pamela E Constantinou; Nadrian C Seeman
Journal:  J Mol Graph Model       Date:  2006-04-19       Impact factor: 2.518

7.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

8.  Six-helix and eight-helix DNA nanotubes assembled from half-tubes.

Authors:  Akinori Kuzuya; Risheng Wang; Ruojie Sha; Nadrian C Seeman
Journal:  Nano Lett       Date:  2007-05-15       Impact factor: 11.189

9.  Programming biomolecular self-assembly pathways.

Authors:  Peng Yin; Harry M T Choi; Colby R Calvert; Niles A Pierce
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

10.  From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal.

Authors:  Jianping Zheng; Jens J Birktoft; Yi Chen; Tong Wang; Ruojie Sha; Pamela E Constantinou; Stephan L Ginell; Chengde Mao; Nadrian C Seeman
Journal:  Nature       Date:  2009-09-03       Impact factor: 49.962
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  6 in total

1.  Programmable molecular recognition based on the geometry of DNA nanostructures.

Authors:  Sungwook Woo; Paul W K Rothemund
Journal:  Nat Chem       Date:  2011-07-10       Impact factor: 24.427

2.  Free energy analysis and mechanism of base pair stacking in nicked DNA.

Authors:  Florian Häse; Martin Zacharias
Journal:  Nucleic Acids Res       Date:  2016-07-12       Impact factor: 16.971

3.  Design and characterization of 1D nanotubes and 2D periodic arrays self-assembled from DNA multi-helix bundles.

Authors:  Tong Wang; Daniel Schiffels; Sergio Martinez Cuesta; Deborah Kuchnir Fygenson; Nadrian C Seeman
Journal:  J Am Chem Soc       Date:  2012-01-17       Impact factor: 15.419

4.  Design Approaches and Computational Tools for DNA Nanostructures.

Authors:  Heeyuen Koh; Jae Gyung Lee; Jae Young Lee; Ryan Kim; Osamu Tabata; Kim Jin-Woo; DO-Nyun Kim
Journal:  IEEE Open J Nanotechnol       Date:  2021-10-14

5.  Self-replication of information-bearing nanoscale patterns.

Authors:  Tong Wang; Ruojie Sha; Rémi Dreyfus; Mirjam E Leunissen; Corinna Maass; David J Pine; Paul M Chaikin; Nadrian C Seeman
Journal:  Nature       Date:  2011-10-12       Impact factor: 49.962

6.  Reversible Covalent Stabilization of Stacking Contacts in DNA Assemblies.

Authors:  Thomas Gerling; Hendrik Dietz
Journal:  Angew Chem Int Ed Engl       Date:  2019-01-29       Impact factor: 15.336
  6 in total

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