Literature DB >> 20528262

SCORE imaging: specimen in a corrected optical rotational enclosure.

Andrew M Petzold1, Victoria M Bedell, Nicole J Boczek, Jeffrey J Essner, Darius Balciunas, Karl J Clark, Stephen C Ekker.   

Abstract

Visual data collection is paramount for the majority of scientific research. The added transparency of the zebrafish (Danio rerio) allows for a greater detail of complex biological research that accompanies seemingly simple observational tools. We developed a visual data analysis and collection approach that takes advantage of the cylindrical nature of the zebrafish allowing for an efficient and effective method for image capture that we call Specimen in a Corrected Optical Rotational Enclosure imaging. To achieve a nondistorted image, zebrafish were placed in a fluorinated ethylene propylene tube with a surrounding optically corrected imaging solution (water). By similarly matching the refractive index of the housing (fluorinated ethylene propylene tubing) to that of the inner liquid and outer liquid (water), distortion was markedly reduced, producing a crisp imagable specimen that is able to be fully rotated 360 degrees. A similar procedure was established for fixed zebrafish embryos using convenient, readily available borosilicate capillaries surrounded by 75% glycerol. The method described here could be applied to chemical genetic screening and other related high-throughput methods within the fish community and among other scientific fields.

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Year:  2010        PMID: 20528262      PMCID: PMC3117241          DOI: 10.1089/zeb.2010.0660

Source DB:  PubMed          Journal:  Zebrafish        ISSN: 1545-8547            Impact factor:   1.985


  12 in total

1.  Transplantation and in vivo imaging of multilineage engraftment in zebrafish bloodless mutants.

Authors:  David Traver; Barry H Paw; Kenneth D Poss; W Todd Penberthy; Shuo Lin; Leonard I Zon
Journal:  Nat Immunol       Date:  2003-11-09       Impact factor: 25.606

2.  In vivo imaging of embryonic vascular development using transgenic zebrafish.

Authors:  Nathan D Lawson; Brant M Weinstein
Journal:  Dev Biol       Date:  2002-08-15       Impact factor: 3.582

3.  High-throughput zebrafish histology.

Authors:  Nicole A Sabaliauskas; Christina A Foutz; Jason R Mest; Lynn R Budgeon; Adam T Sidor; Joseph A Gershenson; Sanjay B Joshi; Keith C Cheng
Journal:  Methods       Date:  2006-07       Impact factor: 3.608

4.  Cell clones and segmentation in leech development.

Authors:  S L Zackson
Journal:  Cell       Date:  1982-12       Impact factor: 41.582

5.  Gene-breaking transposon mutagenesis reveals an essential role for histone H2afza in zebrafish larval development.

Authors:  Sridhar Sivasubbu; Darius Balciunas; Ann E Davidson; Michael A Pickart; Spencer B Hermanson; Kirk J Wangensteen; Daniel C Wolbrink; Stephen C Ekker
Journal:  Mech Dev       Date:  2006-06-09       Impact factor: 1.882

6.  Micro fluid segment technique for screening and development studies on Danio rerio embryos.

Authors:  Anette Funfak; Andreas Brösing; Michael Brand; Johann Michael Köhler
Journal:  Lab Chip       Date:  2007-06-26       Impact factor: 6.799

7.  Efficient gene delivery and gene expression in zebrafish using the Sleeping Beauty transposon.

Authors:  Ann E Davidson; Darius Balciunas; Deanna Mohn; Jennifer Shaffer; Spencer Hermanson; Sridhar Sivasubbu; M Pat Cliff; Perry B Hackett; Stephen C Ekker
Journal:  Dev Biol       Date:  2003-11-15       Impact factor: 3.582

8.  Zebrafish myelination: a transparent model for remyelination?

Authors:  Clare E Buckley; Paul Goldsmith; Robin J M Franklin
Journal:  Dis Model Mech       Date:  2008 Nov-Dec       Impact factor: 5.758

9.  Nicotine response genetics in the zebrafish.

Authors:  Andrew M Petzold; Darius Balciunas; Sridhar Sivasubbu; Karl J Clark; Victoria M Bedell; Stephanie E Westcot; Shelly R Myers; Gary L Moulder; Mark J Thomas; Stephen C Ekker
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-26       Impact factor: 11.205

10.  Genome-wide reverse genetics framework to identify novel functions of the vertebrate secretome.

Authors:  Michael A Pickart; Eric W Klee; Aubrey L Nielsen; Sridhar Sivasubbu; Eric M Mendenhall; Brent R Bill; Eleanor Chen; Craig E Eckfeldt; Michelle Knowlton; Mara E Robu; Jon D Larson; Yun Deng; Lisa A Schimmenti; Lynda B M Ellis; Catherine M Verfaillie; Matthias Hammerschmidt; Steven A Farber; Stephen C Ekker
Journal:  PLoS One       Date:  2006-12-20       Impact factor: 3.240

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  28 in total

1.  Compact plane illumination plugin device to enable light sheet fluorescence imaging of multi-cellular organisms on an inverted wide-field microscope.

Authors:  Zeyi Guan; Juhyun Lee; Hao Jiang; Siyan Dong; Nelson Jen; Tzung Hsiai; Chih-Ming Ho; Peng Fei
Journal:  Biomed Opt Express       Date:  2015-12-21       Impact factor: 3.732

2.  The lineage-specific gene ponzr1 is essential for zebrafish pronephric and pharyngeal arch development.

Authors:  Victoria M Bedell; Anthony D Person; Jon D Larson; Anna McLoon; Darius Balciunas; Karl J Clark; Kevin I Neff; Katie E Nelson; Brent R Bill; Lisa A Schimmenti; Soraya Beiraghi; Stephen C Ekker
Journal:  Development       Date:  2012-02       Impact factor: 6.868

3.  Kit signaling is required for development of coordinated motility patterns in zebrafish gastrointestinal tract.

Authors:  Adam Rich; Scott Gordon; Chris Brown; Simon J Gibbons; Katherine Schaefer; Grant Hennig; Gianrico Farrugia
Journal:  Zebrafish       Date:  2013-01-08       Impact factor: 1.985

Review 4.  Whole-animal imaging, gene function, and the Zebrafish Phenome Project.

Authors:  Keith C Cheng; Xuying Xin; Darin P Clark; Patrick La Riviere
Journal:  Curr Opin Genet Dev       Date:  2011-09-28       Impact factor: 5.578

5.  A transgenic zebrafish model for monitoring glucocorticoid receptor activity.

Authors:  R G Krug; T L Poshusta; K J Skuster; M R Berg; S L Gardner; K J Clark
Journal:  Genes Brain Behav       Date:  2014-04-22       Impact factor: 3.449

6.  RhoC maintains vascular homeostasis by regulating VEGF-induced signaling in endothelial cells.

Authors:  Luke H Hoeppner; Sutapa Sinha; Ying Wang; Resham Bhattacharya; Shamit Dutta; Xun Gong; Victoria M Bedell; Sandip Suresh; Changzoon Chun; Ramani Ramchandran; Stephen C Ekker; Debabrata Mukhopadhyay
Journal:  J Cell Sci       Date:  2015-07-01       Impact factor: 5.285

7.  Fully automated cellular-resolution vertebrate screening platform with parallel animal processing.

Authors:  Tsung-Yao Chang; Carlos Pardo-Martin; Amin Allalou; Carolina Wählby; Mehmet Fatih Yanik
Journal:  Lab Chip       Date:  2011-12-08       Impact factor: 6.799

8.  Intestinal Transit Time and Cortisol-Mediated Stress in Zebrafish.

Authors:  Clayton Brady; Maxwell Denora; Ian Shannon; Karl J Clark; Adam Rich
Journal:  Zebrafish       Date:  2017-07-20       Impact factor: 1.985

9.  zWEDGI: Wounding and Entrapment Device for Imaging Live Zebrafish Larvae.

Authors:  Kayla Huemer; Jayne M Squirrell; Robert Swader; Danny C LeBert; Anna Huttenlocher; Kevin W Eliceiri
Journal:  Zebrafish       Date:  2016-09-27       Impact factor: 1.985

10.  Long-term Live Imaging Device for Improved Experimental Manipulation of Zebrafish Larvae.

Authors:  Kayla Huemer; Jayne M Squirrell; Robert Swader; Kirsten Pelkey; Danny C LeBert; Anna Huttenlocher; Kevin W Eliceiri
Journal:  J Vis Exp       Date:  2017-10-27       Impact factor: 1.355

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