Literature DB >> 20527884

Differential solvation free energies of oxonium and ammonium ions: insights from quantum chemical calculations.

Giacomo Saielli1.   

Abstract

We have employed computational protocols to determine the differential solvation free energy in water of oxonium and ammonium ions. We have focused our analysis on pairs of onium ions having the same hydrocarbon content and substitutional pattern (HCSP pairs). In agreement with previous suggestions (Taft, R. W.; Wolf. J. F.; Beauchamp, J. L.; Scorrano, G.; Arnett, E. M. J. Am. Chem. Soc. 1978, 100, 1240), we found that cavitation and van der Waals terms do not contribute to the differential solvation free energy. Moreover, we observe that oxonium ions are more strongly solvated than the analogous ammonium ions even though the former ones have fewer H-bond donor sites. The performance of two different continuum solvation models, PCM and SMD, is discussed.

Entities:  

Year:  2010        PMID: 20527884     DOI: 10.1021/jp103783j

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  4 in total

1.  Insight into the recognition, binding, and reactivity of catalytic metallodrugs targeting stem loop IIb of hepatitis C IRES RNA.

Authors:  Seth S Bradford; Martin James Ross; Insiya Fidai; James A Cowan
Journal:  ChemMedChem       Date:  2014-04-22       Impact factor: 3.466

2.  Analysis of Structure-Activity Relationships Based on the Hepatitis C Virus SLIIb Internal Ribosomal Entry Sequence RNA-Targeting GGHYRFK⋅Cu Complex.

Authors:  Martin James Ross; Insiya Fidai; James A Cowan
Journal:  Chembiochem       Date:  2017-08-07       Impact factor: 3.164

3.  Mixed crystal of bis-(ammonium/oxonium) tetra-aqua-μ3-fluorido-dodeca-kis-(μ2-tri-fluoro-acetato)octa-hedro-hexa-ytterbiate(III) tetra-hydrate, [(NH4)1-x (H3O) x ]2[Yb6F8(O2CCF3)12(H2O)4]·4H2O (x = 1/4), containing a hexa-nuclear ytterbium(III) carboxyl-ate complex with face-capping fluoride ligands and comprising an unusual kind of substitutional disorder.

Authors:  Florian Morsbach; Walter Frank
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-05-17

4.  Interactions of Amino Acids and Aminoxazole Derivatives: Cocrystal Formation and Prebiotic Implications Enabled by Computational Analysis.

Authors:  Nieves Lavado; Juan García de la Concepción; Reyes Babiano; Pedro Cintas; Mark E Light
Journal:  Orig Life Evol Biosph       Date:  2019-07-20       Impact factor: 1.950

  4 in total

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