Literature DB >> 20526446

GPU computing with Kaczmarz's and other iterative algorithms for linear systems.

Joseph M Elble1, Nikolaos V Sahinidis, Panagiotis Vouzis.   

Abstract

The graphics processing unit (GPU) is used to solve large linear systems derived from partial differential equations. The differential equations studied are strongly convection-dominated, of various sizes, and common to many fields, including computational fluid dynamics, heat transfer, and structural mechanics. The paper presents comparisons between GPU and CPU implementations of several well-known iterative methods, including Kaczmarz's, Cimmino's, component averaging, conjugate gradient normal residual (CGNR), symmetric successive overrelaxation-preconditioned conjugate gradient, and conjugate-gradient-accelerated component-averaged row projections (CARP-CG). Computations are preformed with dense as well as general banded systems. The results demonstrate that our GPU implementation outperforms CPU implementations of these algorithms, as well as previously studied parallel implementations on Linux clusters and shared memory systems. While the CGNR method had begun to fall out of favor for solving such problems, for the problems studied in this paper, the CGNR method implemented on the GPU performed better than the other methods, including a cluster implementation of the CARP-CG method.

Entities:  

Year:  2010        PMID: 20526446      PMCID: PMC2879082          DOI: 10.1016/j.parco.2009.12.003

Source DB:  PubMed          Journal:  Parallel Comput        ISSN: 0167-8191            Impact factor:   0.986


  2 in total

1.  A fast optimization algorithm for multicriteria intensity modulated proton therapy planning.

Authors:  Wei Chen; David Craft; Thomas M Madden; Kewu Zhang; Hanne M Kooy; Gabor T Herman
Journal:  Med Phys       Date:  2010-09       Impact factor: 4.071

2.  GPU-BLAST: using graphics processors to accelerate protein sequence alignment.

Authors:  Panagiotis D Vouzis; Nikolaos V Sahinidis
Journal:  Bioinformatics       Date:  2010-11-18       Impact factor: 6.937

  2 in total

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