Literature DB >> 20525832

Complete genome sequence of Bifidobacterium longum JDM301.

Yan-Xia Wei1, Zhuo-Yang Zhang, Chang Liu, Yong-Zhang Zhu, Yong-Qiang Zhu, Huajun Zheng, Guo-Ping Zhao, Shengyue Wang, Xiao-Kui Guo.   

Abstract

Bifidobacteria, known as probiotic bacteria, are high-G+C Gram-positive bacteria which naturally inhabit the human gastrointestinal tract and vagina. Recently, we completely sequenced Bifidobacterium longum JDM301, which is a widely used Chinese commercial strain with several probiotic properties.

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Year:  2010        PMID： 20525832      PMCID： PMC2916372          DOI： 10.1128/JB.00538-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

Review 2.  Towards understanding molecular modes of probiotic action.

Authors:  Maria L Marco; Sonia Pavan; Michiel Kleerebezem
Journal:  Curr Opin Biotechnol       Date:  2006-02-28       Impact factor: 9.740

Review 3.  Genome-scale analyses of health-promoting bacteria: probiogenomics.

Authors:  Marco Ventura; Sarah O'Flaherty; Marcus J Claesson; Francesca Turroni; Todd R Klaenhammer; Douwe van Sinderen; Paul W O'Toole
Journal:  Nat Rev Microbiol       Date:  2008-11-24       Impact factor: 60.633

4.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.

Authors:  Mark A Schell; Maria Karmirantzou; Berend Snel; David Vilanova; Bernard Berger; Gabriella Pessi; Marie-Camille Zwahlen; Frank Desiere; Peer Bork; Michele Delley; R David Pridmore; Fabrizio Arigoni
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-15       Impact factor: 11.205

7.  Glycosaminoglycan degradation-inhibitory lactic acid bacteria ameliorate 2,4,6-trinitrobenzenesulfonic acid-induced colitis in mice.

Authors:  Bomi Lee; Jung-Hee Lee; Hye-Sung Lee; Eun-Ah Bae; Chul-Sung Huh; Young-Tae Ahn; Dong-Hyun Kim
Journal:  J Microbiol Biotechnol       Date:  2009-06       Impact factor: 2.351

Review 8.  Genomics of lactic acid bacteria.

Authors:  Joel Schroeter; Todd Klaenhammer
Journal:  FEMS Microbiol Lett       Date:  2008-12-11       Impact factor: 2.742

9.  The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome.

Authors:  D A Sela; J Chapman; A Adeuya; J H Kim; F Chen; T R Whitehead; A Lapidus; D S Rokhsar; C B Lebrilla; J B German; N P Price; P M Richardson; D A Mills
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-24       Impact factor: 11.205

Review 10.  Antibiotic resistance in non-enterococcal lactic acid bacteria and bifidobacteria.

Authors:  Mohammed Salim Ammor; Ana Belén Flórez; Baltasar Mayo
Journal:  Food Microbiol       Date:  2006-12-28       Impact factor: 5.516
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  13 in total

Review 1.  Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria.

Authors:  Beile Gao; Radhey S Gupta
Journal:  Microbiol Mol Biol Rev       Date:  2012-03       Impact factor: 11.056

2.  Comparative investigation of the various determinants that influence the codon and amino acid usage patterns in the genus Bifidobacterium.

Authors:  Ayan Roy; Subhasish Mukhopadhyay; Indrani Sarkar; Arnab Sen
Journal:  World J Microbiol Biotechnol       Date:  2015-04-05       Impact factor: 3.312

3.  Carbohydrate metabolism in Bifidobacteria.

Authors:  Karina Pokusaeva; Gerald F Fitzgerald; Douwe van Sinderen
Journal:  Genes Nutr       Date:  2011-02-16       Impact factor: 5.523

4.  Physical and Functional Interplay between MazF1Bif and Its Noncognate Antitoxins from Bifidobacterium longum.

Authors:  Yanxia Wei; Yang Li; Fan Yang; Qiong Wu; Dianbin Liu; Xiangyang Li; Hui Hua; Xiaomei Liu; Yugang Wang; Kuiyang Zheng; Renxian Tang
Journal:  Appl Environ Microbiol       Date:  2017-04-17       Impact factor: 4.792

5.  Safety assessment of Bifidobacterium longum JDM301 based on complete genome sequences.

Authors:  Yan-Xia Wei; Zhuo-Yang Zhang; Chang Liu; Pradeep K Malakar; Xiao-Kui Guo
Journal:  World J Gastroenterol       Date:  2012-02-07       Impact factor: 5.742

6.  Transcription analysis of a lantibiotic gene cluster from Bifidobacterium longum DJO10A.

Authors:  Ju-Hoon Lee; Xiulan Li; Daniel J O'Sullivan
Journal:  Appl Environ Microbiol       Date:  2011-07-08       Impact factor: 4.792

7.  Commensal Bacteria Impact a Protozoan's Integration into the Murine Gut Microbiota in a Dietary Nutrient-Dependent Manner.

Authors:  Yanxia Wei; Jing Gao; Yanbo Kou; Liyuan Meng; Xingping Zheng; Ming Liang; Hongxiang Sun; Zhuanzhuan Liu; Yugang Wang
Journal:  Appl Environ Microbiol       Date:  2020-05-19       Impact factor: 4.792

Review 8.  Bifidobacterial enzymes involved in the metabolism of human milk oligosaccharides.

Authors:  Motomitsu Kitaoka
Journal:  Adv Nutr       Date:  2012-05-01       Impact factor: 8.701

9.  Intraspecies Genomic Diversity and Long-Term Persistence of Bifidobacterium longum.

Authors:  Andrei V Chaplin; Boris A Efimov; Vladimir V Smeianov; Lyudmila I Kafarskaia; Alla P Pikina; Andrei N Shkoporov
Journal:  PLoS One       Date:  2015-08-14       Impact factor: 3.240

10.  Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems.

Authors:  A O'Callaghan; F Bottacini; M O'Connell Motherway; D van Sinderen
Journal:  BMC Genomics       Date:  2015-10-21       Impact factor: 3.969
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