Literature DB >> 20525575

Why would phylogeneticists ignore computerized sequence alignment?

David A Morrison.   

Abstract

Mesh：

Year:  2009        PMID： 20525575     DOI： 10.1093/sysbio/syp009

Source DB:  PubMed          Journal:  Syst Biol        ISSN： 1063-5157            Impact factor:   15.683


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  20 in total

1.  High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes.

Authors:  Penka Markova-Raina; Dmitri Petrov
Journal:  Genome Res       Date:  2011-03-10       Impact factor: 9.043

2.  Conserved Critical Evolutionary Gene Structures in Orthologs.

Authors:  Miguel A Fuertes; José R Rodrigo; Carlos Alonso
Journal:  J Mol Evol       Date:  2019-02-28       Impact factor: 2.395

3.  Reply to Gatesy and Springer: Claims of homology errors and zombie lineages do not compromise the dating of placental diversification.

Authors:  Liang Liu; Jin Zhang; Frank E Rheindt; Fumin Lei; Yanhua Qu; Yu Wang; Yu Zhang; Corwin Sullivan; Wenhui Nie; Jinhuan Wang; Fengtang Yang; Jinping Chen; Scott V Edwards; Jin Meng; Shaoyuan Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-24       Impact factor: 11.205

4.  Iteratively refined guide trees help improving alignment and phylogenetic inference in the mushroom family Bolbitiaceae.

Authors:  Annamária Tóth; Anton Hausknecht; Irmgard Krisai-Greilhuber; Tamás Papp; Csaba Vágvölgyi; László G Nagy
Journal:  PLoS One       Date:  2013-02-13       Impact factor: 3.240

5.  Benefits of using molecular structure and abundance in phylogenomic analysis.

Authors:  Gustavo Caetano-Anollés; Arshan Nasir
Journal:  Front Genet       Date:  2012-09-06       Impact factor: 4.599

6.  SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation.

Authors:  Catherine L Anderson; Cory L Strope; Etsuko N Moriyama
Journal:  BMC Bioinformatics       Date:  2011-05-21       Impact factor: 3.169

7.  Odorant binding proteins of the red imported fire ant, Solenopsis invicta: an example of the problems facing the analysis of widely divergent proteins.

Authors:  Dietrich Gotzek; Hugh M Robertson; Yannick Wurm; DeWayne Shoemaker
Journal:  PLoS One       Date:  2011-01-31       Impact factor: 3.240

8.  The proteomic complexity and rise of the primordial ancestor of diversified life.

Authors:  Kyung Mo Kim; Gustavo Caetano-Anollés
Journal:  BMC Evol Biol       Date:  2011-05-25       Impact factor: 3.260

9.  Treelength optimization for phylogeny estimation.

Authors:  Kevin Liu; Tandy Warnow
Journal:  PLoS One       Date:  2012-03-19       Impact factor: 3.240

10.  Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference.

Authors:  Ge Tan; Matthieu Muffato; Christian Ledergerber; Javier Herrero; Nick Goldman; Manuel Gil; Christophe Dessimoz
Journal:  Syst Biol       Date:  2015-06-01       Impact factor: 15.683
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