Literature DB >> 20523823

Comparison of Nested PCR and RFLP for Identification and Classification of Malassezia Yeasts from Healthy Human Skin.

Byung Ho Oh1, Young Chan Song, Yang Won Lee, Yong Beom Choe, Kyu Joong Ahn.   

Abstract

BACKGROUND: Malassezia yeasts are normal flora of the skin found in 75~98% of healthy subjects. The accurate identification of the Malassezia species is important for determining the pathogenesis of the Malassezia yeasts with regard to various skin diseases such as Malassezia folliculitis, seborrheic dermatitis, and atopic dermatitis.
OBJECTIVE: This research was conducted to determine a more accurate and rapid molecular test for the identification and classification of Malassezia yeasts.
METHODS: We compared the accuracy and efficacy of restriction fragment length polymorphism (RFLP) and the nested polymerase chain reaction (PCR) for the identification of Malassezia yeasts.
RESULTS: Although both methods demonstrated rapid and reliable results with regard to identification, the nested PCR method was faster. However, 7 different Malassezia species (1.2%) were identified by the nested PCR compared to the RFLP method.
CONCLUSION: Our results show that RFLP method was relatively more accurate and reliable for the detection of various Malassezia species compared to the nested PCR. But, in the aspect of simplicity and time saving, the latter method has its own advantages. In addition, the 26S rDNA, which was targeted in this study, contains highly conserved base sequences and enough sequence variation for inter-species identification of Malassezia yeasts.

Entities:  

Keywords:  26S rDNA PCR-RFLP; Malassezia yeasts; Molecular biological classification; Nested PCR

Year:  2009        PMID: 20523823      PMCID: PMC2861263          DOI: 10.5021/ad.2009.21.4.352

Source DB:  PubMed          Journal:  Ann Dermatol        ISSN: 1013-9087            Impact factor:   1.444


  23 in total

1.  A simple PCR-RFLP method for identification and differentiation of 11 Malassezia species.

Authors:  Hossein Mirhendi; Koichi Makimura; Kamiar Zomorodian; Tsuyoshi Yamada; Takashi Sugita; Hideyo Yamaguchi
Journal:  J Microbiol Methods       Date:  2004-12-23       Impact factor: 2.363

2.  Identification and typing of Malassezia yeasts using amplified fragment length polymorphism (AFLP), random amplified polymorphic DNA (RAPD) and denaturing gradient gel electrophoresis (DGGE).

Authors:  B Theelen; M Silvestri; E Guého; A van Belkum; T Boekhout
Journal:  FEMS Yeast Res       Date:  2001-07       Impact factor: 2.796

3.  Identification of Malassezia species from patient skin scales by PCR-RFLP.

Authors:  G Gaitanis; A Velegraki; E Frangoulis; A Mitroussia; A Tsigonia; A Tzimogianni; A Katsambas; N J Legakis
Journal:  Clin Microbiol Infect       Date:  2002-03       Impact factor: 8.067

4.  New yeast species, Malassezia dermatis, isolated from patients with atopic dermatitis.

Authors:  Takashi Sugita; Masako Takashima; Takako Shinoda; Hajime Suto; Tetsushi Unno; Ryoji Tsuboi; Hideoki Ogawa; Akemi Nishikawa
Journal:  J Clin Microbiol       Date:  2002-04       Impact factor: 5.948

Review 5.  Skin diseases associated with Malassezia species.

Authors:  Aditya K Gupta; Roma Batra; Robyn Bluhm; Teun Boekhout; Thomas L Dawson
Journal:  J Am Acad Dermatol       Date:  2004-11       Impact factor: 11.527

6.  Sequence diversity of the intergenic spacer region of the rRNA gene of Malassezia globosa colonizing the skin of patients with atopic dermatitis and healthy individuals.

Authors:  Takashi Sugita; Minako Kodama; Masuyoshi Saito; Tomonobu Ito; Yukihiko Kato; Ryoji Tsuboi; Akemi Nishikawa
Journal:  J Clin Microbiol       Date:  2003-07       Impact factor: 5.948

7.  A new yeast, Malassezia yamatoensis, isolated from a patient with seborrheic dermatitis, and its distribution in patients and healthy subjects.

Authors:  Takashi Sugita; Mami Tajima; Masako Takashima; Misato Amaya; Masuyoshi Saito; Ryoji Tsuboi; Akemi Nishikawa
Journal:  Microbiol Immunol       Date:  2004       Impact factor: 1.955

8.  Fast, noninvasive method for molecular detection and differentiation of Malassezia yeast species on human skin and application of the method to dandruff microbiology.

Authors:  Christina M Gemmer; Yvonne M DeAngelis; Bart Theelen; Teun Boekhout; Thomas L Dawson
Journal:  J Clin Microbiol       Date:  2002-09       Impact factor: 5.948

9.  Description of a new yeast species, Malassezia japonica, and its detection in patients with atopic dermatitis and healthy subjects.

Authors:  Takashi Sugita; Masako Takashima; Minako Kodama; Ryoji Tsuboi; Akemi Nishikawa
Journal:  J Clin Microbiol       Date:  2003-10       Impact factor: 5.948

10.  Malassezia nana sp. nov., a novel lipid-dependent yeast species isolated from animals.

Authors:  Asuka Hirai; Rui Kano; Koichi Makimura; Eduardo Robson Duarte; Júnia Soares Hamdan; Marc-André Lachance; Hideyo Yamaguchi; Atsuhiko Hasegawa
Journal:  Int J Syst Evol Microbiol       Date:  2004-03       Impact factor: 2.747

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  15 in total

Review 1.  Topographical and physiological differences of the skin mycobiome in health and disease.

Authors:  Jay-Hyun Jo; Elizabeth A Kennedy; Heidi H Kong
Journal:  Virulence       Date:  2016-10-18       Impact factor: 5.882

2.  Molecular analysis of malassezia microflora on the skin of the patients with atopic dermatitis.

Authors:  Seon Mi Yim; Ji Young Kim; Jong Hyun Ko; Yang Won Lee; Yong Beom Choe; Kyu Joong Ahn
Journal:  Ann Dermatol       Date:  2010-02-28       Impact factor: 1.444

3.  Molecular Identification of Malassezia Species in Patients with Malassezia folliculitis in Sfax, Tunisia.

Authors:  F Cheikhrouhou; R Guidara; A Masmoudi; H Trabelsi; S Neji; H Sellami; F Makni; A Ayadi
Journal:  Mycopathologia       Date:  2017-01-20       Impact factor: 2.574

Review 4.  The Malassezia genus in skin and systemic diseases.

Authors:  Georgios Gaitanis; Prokopios Magiatis; Markus Hantschke; Ioannis D Bassukas; Aristea Velegraki
Journal:  Clin Microbiol Rev       Date:  2012-01       Impact factor: 26.132

5.  Gene chip technology used in the detection of HPV infection in esophageal cancer of Kazakh Chinese in Xinjiang Province.

Authors:  Wei-Gang Chen; Chun-Mei Yang; Li-Hong Xu; Ning Zhang; Xiao-Yan Liu; Yun-Gui Ma; Xiao-Ling Huo; Yu-Sheng Han; De-An Tian; Yong Zheng
Journal:  J Huazhong Univ Sci Technolog Med Sci       Date:  2014-06-18

6.  Molecular and Phenotypic Identification and Speciation of Malassezia Yeasts Isolated from Egyptian Patients with Pityriasis Versicolor.

Authors:  Walaa Othman Elshabrawy; Niveen Saudy; Manar Sallam
Journal:  J Clin Diagn Res       Date:  2017-08-01

7.  Distribution of Malassezia species on healthy human skin in Bosnia and Herzegovina: correlation with body part, age and gender.

Authors:  Asja Prohic; Dubravka Simic; Tamara Jovovic Sadikovic; Mersiha Krupalija-Fazlic
Journal:  Iran J Microbiol       Date:  2014-08

8.  The Prevalence and Species Composition of Malassezia yeasts in Patients with Clinically Suspected Onychomycosis.

Authors:  Asja Prohic; Suada Kuskunovic-Vlahovljak; Tamara Jovovic Sadikovic; Semra Cavaljuga
Journal:  Med Arch       Date:  2015-04-06

9.  Molecular biological identification of malassezia yeasts using pyrosequencing.

Authors:  Ji Young Kim; Hyung Jin Hahn; Yong Beom Choe; Yang Won Lee; Kyu Joong Ahn; Kee Chan Moon
Journal:  Ann Dermatol       Date:  2013-02-14       Impact factor: 1.444

Review 10.  The Role of Malassezia spp. in Atopic Dermatitis.

Authors:  Martin Glatz; Philipp P Bosshard; Wolfram Hoetzenecker; Peter Schmid-Grendelmeier
Journal:  J Clin Med       Date:  2015-05-29       Impact factor: 4.241

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