Literature DB >> 20520714

The Ectocarpus genome and the independent evolution of multicellularity in brown algae.

J Mark Cock1, Lieven Sterck, Pierre Rouzé, Delphine Scornet, Andrew E Allen, Grigoris Amoutzias, Veronique Anthouard, François Artiguenave, Jean-Marc Aury, Jonathan H Badger, Bank Beszteri, Kenny Billiau, Eric Bonnet, John H Bothwell, Chris Bowler, Catherine Boyen, Colin Brownlee, Carl J Carrano, Bénédicte Charrier, Ga Youn Cho, Susana M Coelho, Jonas Collén, Erwan Corre, Corinne Da Silva, Ludovic Delage, Nicolas Delaroque, Simon M Dittami, Sylvie Doulbeau, Marek Elias, Garry Farnham, Claire M M Gachon, Bernhard Gschloessl, Svenja Heesch, Kamel Jabbari, Claire Jubin, Hiroshi Kawai, Kei Kimura, Bernard Kloareg, Frithjof C Küpper, Daniel Lang, Aude Le Bail, Catherine Leblanc, Patrice Lerouge, Martin Lohr, Pascal J Lopez, Cindy Martens, Florian Maumus, Gurvan Michel, Diego Miranda-Saavedra, Julia Morales, Hervé Moreau, Taizo Motomura, Chikako Nagasato, Carolyn A Napoli, David R Nelson, Pi Nyvall-Collén, Akira F Peters, Cyril Pommier, Philippe Potin, Julie Poulain, Hadi Quesneville, Betsy Read, Stefan A Rensing, Andrés Ritter, Sylvie Rousvoal, Manoj Samanta, Gaelle Samson, Declan C Schroeder, Béatrice Ségurens, Martina Strittmatter, Thierry Tonon, James W Tregear, Klaus Valentin, Peter von Dassow, Takahiro Yamagishi, Yves Van de Peer, Patrick Wincker.   

Abstract

Brown algae (Phaeophyceae) are complex photosynthetic organisms with a very different evolutionary history to green plants, to which they are only distantly related. These seaweeds are the dominant species in rocky coastal ecosystems and they exhibit many interesting adaptations to these, often harsh, environments. Brown algae are also one of only a small number of eukaryotic lineages that have evolved complex multicellularity (Fig. 1). We report the 214 million base pair (Mbp) genome sequence of the filamentous seaweed Ectocarpus siliculosus (Dillwyn) Lyngbye, a model organism for brown algae, closely related to the kelps (Fig. 1). Genome features such as the presence of an extended set of light-harvesting and pigment biosynthesis genes and new metabolic processes such as halide metabolism help explain the ability of this organism to cope with the highly variable tidal environment. The evolution of multicellularity in this lineage is correlated with the presence of a rich array of signal transduction genes. Of particular interest is the presence of a family of receptor kinases, as the independent evolution of related molecules has been linked with the emergence of multicellularity in both the animal and green plant lineages. The Ectocarpus genome sequence represents an important step towards developing this organism as a model species, providing the possibility to combine genomic and genetic approaches to explore these and other aspects of brown algal biology further.

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Year:  2010        PMID: 20520714     DOI: 10.1038/nature09016

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  21 in total

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Authors:  H Goddard; N F Manison; D Tomos; C Brownlee
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

2.  Origins and evolution of the recA/RAD51 gene family: evidence for ancient gene duplication and endosymbiotic gene transfer.

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-23       Impact factor: 11.205

Review 3.  Complex life cycles of multicellular eukaryotes: new approaches based on the use of model organisms.

Authors:  Susana M Coelho; Akira F Peters; Bénédicte Charrier; Denis Roze; Christophe Destombe; Myriam Valero; J Mark Cock
Journal:  Gene       Date:  2007-08-08       Impact factor: 3.688

Review 4.  MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion.

Authors:  Kevin J Peterson; Michael R Dietrich; Mark A McPeek
Journal:  Bioessays       Date:  2009-07       Impact factor: 4.345

Review 5.  Ca2+ signalling in plants and green algae--changing channels.

Authors:  Glen L Wheeler; Colin Brownlee
Journal:  Trends Plant Sci       Date:  2008-08-12       Impact factor: 18.313

Review 6.  Receptor-like kinases shape the plant.

Authors:  Ive De Smet; Ute Voss; Gerd Jürgens; Tom Beeckman
Journal:  Nat Cell Biol       Date:  2009-10       Impact factor: 28.824

Review 7.  Structure and mechanics of integrin-based cell adhesion.

Authors:  M Amin Arnaout; Simon L Goodman; Jian-Ping Xiong
Journal:  Curr Opin Cell Biol       Date:  2007-10-24       Impact factor: 8.382

8.  The complete DNA sequence of the Ectocarpus siliculosus Virus EsV-1 genome.

Authors:  N Delaroque; D G Müller; G Bothe; T Pohl; R Knippers; W Boland
Journal:  Virology       Date:  2001-08-15       Impact factor: 3.616

9.  Iodide accumulation provides kelp with an inorganic antioxidant impacting atmospheric chemistry.

Authors:  Frithjof C Küpper; Lucy J Carpenter; Gordon B McFiggans; Carl J Palmer; Tim J Waite; Eva-Maria Boneberg; Sonja Woitsch; Markus Weiller; Rafael Abela; Daniel Grolimund; Philippe Potin; Alison Butler; George W Luther; Peter M H Kroneck; Wolfram Meyer-Klaucke; Martin C Feiters
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-05       Impact factor: 11.205

Review 10.  The Roco protein family: a functional perspective.

Authors:  Ignacio Marín; Wouter N van Egmond; Peter J M van Haastert
Journal:  FASEB J       Date:  2008-06-03       Impact factor: 5.191

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  271 in total

1.  Plant ABC Transporters.

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Journal:  Arabidopsis Book       Date:  2011-12-06

2.  Ultrastructural analysis of flagellar development in plurilocular sporangia of Ectocarpus siliculosus (Phaeophyceae).

Authors:  Gang Fu; Chikako Nagasato; Toshiaki Ito; Dieter G Müller; Taizo Motomura
Journal:  Protoplasma       Date:  2012-04-04       Impact factor: 3.356

3.  "Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity.

Authors:  Irma Lozada-Chávez; Peter F Stadler; Sonja J Prohaska
Journal:  Orig Life Evol Biosph       Date:  2012-02-10       Impact factor: 1.950

Review 4.  Endogenous viruses: insights into viral evolution and impact on host biology.

Authors:  Cédric Feschotte; Clément Gilbert
Journal:  Nat Rev Genet       Date:  2012-03-16       Impact factor: 53.242

5.  Genetic regulation of life cycle transitions in the brown alga Ectocarpus.

Authors:  Susana M Coelho; Olivier Godfroy; Alok Arun; Gildas Le Corguillé; Akira F Peters; J Mark Cock
Journal:  Plant Signal Behav       Date:  2011-11-01

Review 6.  Conservation and divergence in plant microRNAs.

Authors:  Matthew W Jones-Rhoades
Journal:  Plant Mol Biol       Date:  2011-10-14       Impact factor: 4.076

7.  Immunolocalization of cell wall carbohydrate epitopes in seaweeds: presence of land plant epitopes in Fucus vesiculosus L. (Phaeophyceae).

Authors:  Sandra Cristina Raimundo; Utku Avci; Christina Hopper; Sivakumar Pattathil; Michael G Hahn; Zoë A Popper
Journal:  Planta       Date:  2015-09-28       Impact factor: 4.116

8.  Understanding the Evolution of Mitochondrial Genomes in Phaeophyceae Inferred from Mitogenomes of Ishige okamurae (Ishigeales) and Dictyopteris divaricata (Dictyotales).

Authors:  Feng Liu; Yongyu Zhang; Yuping Bi; Weizhou Chen; Fiona Wanjiku Moejes
Journal:  J Mol Evol       Date:  2019-01-02       Impact factor: 2.395

9.  Dynamic microtubules and endomembrane cycling contribute to polarity establishment and early development of Ectocarpus mitospores.

Authors:  Jeffrey J Green; Diégo Cordero Cervantes; Nick T Peters; Kyle O Logan; Darryl L Kropf
Journal:  Protoplasma       Date:  2013-01-16       Impact factor: 3.356

10.  Prediction and validation of potential pathogenic microRNAs involved in Phytophthora infestans infection.

Authors:  Juanjuan Cui; Yushi Luan; Weichen Wang; Junmiao Zhai
Journal:  Mol Biol Rep       Date:  2014-01-16       Impact factor: 2.316

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