Literature DB >> 20516609

Crystallization and preliminary X-ray analysis of SDR-type pyridoxal dehydrogenase from Mesorhizobium loti.

Huy Nhat Chu1, Jun Kobayashi, Yu Yoshikane, Bunzo Mikami, Toshiharu Yagi.   

Abstract

Pyridoxal 4-dehydrogenase from Mesorhizobium loti MAFF303099 was overexpressed in Escherichia coli. The recombinant selenomethionine-substituted enzyme was purified and crystallized by the sitting-drop vapour-diffusion method using PEG 4000 as precipitant. Crystals grew in the presence of 0.45 mM NAD(+). The crystals diffracted to 2.9 A resolution and belonged to the monoclinic space group P2(1), with unit-cell parameters a = 86.20, b = 51.11, c = 91.73 A, beta = 89.36 degrees. The calculated V(M) values suggested that the asymmetric unit contained four molecules.

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Year:  2010        PMID: 20516609      PMCID: PMC2882779          DOI: 10.1107/S1744309110015101

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  Substitution with selenomethionine can enhance the stability of methionine-rich proteins.

Authors:  N C Gassner; W A Baase; A C Hausrath; B W Matthews
Journal:  J Mol Biol       Date:  1999-11-19       Impact factor: 5.469

2.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

3.  Identification of a new tetrameric pyridoxal 4-dehydrogenase as the second enzyme in the degradation pathway for pyridoxine in a nitrogen-fixing symbiotic bacterium, Mesorhizobium loti.

Authors:  Nana Yokochi; Saki Nishimura; Yu Yoshikane; Kouhei Ohnishi; Toshiharu Yagi
Journal:  Arch Biochem Biophys       Date:  2006-06-16       Impact factor: 4.013

4.  Crystallization and preliminary X-ray analysis of pyridoxal 4-dehydrogenase, the second enzyme in degradation pathway I of pyridoxine.

Authors:  Nana Yokochi; Yu Yoshikane; Toshiharu Yagi; Masayuki Yamasaki; Bunzo Mikami
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-10-20

5.  Crystal structure and enzyme kinetics of the (S)-specific 1-phenylethanol dehydrogenase of the denitrifying bacterium strain EbN1.

Authors:  H Wolfgang Höffken; Minh Duong; Thomas Friedrich; Michael Breuer; Bernhard Hauer; Richard Reinhardt; Ralf Rabus; Johann Heider
Journal:  Biochemistry       Date:  2006-01-10       Impact factor: 3.162

6.  Structural basis for substrate specificity in human monomeric carbonyl reductases.

Authors:  Ewa S Pilka; Frank H Niesen; Wen Hwa Lee; Yasser El-Hawari; James E Dunford; Grazyna Kochan; Vladimir Wsol; Hans-Joerg Martin; Edmund Maser; Udo Oppermann
Journal:  PLoS One       Date:  2009-10-20       Impact factor: 3.240

7.  Molecular cloning, expression, and properties of an unusual aldo-keto reductase family enzyme, pyridoxal 4-dehydrogenase, that catalyzes irreversible oxidation of pyridoxal.

Authors:  Nana Yokochi; Yu Yoshikane; Yanee Trongpanich; Kouhei Ohnishi; Toshiharu Yagi
Journal:  J Biol Chem       Date:  2004-06-29       Impact factor: 5.157

8.  Cofactor-induced conformational rearrangements establish a catalytically competent active site and a proton relay conduit in FabG.

Authors:  Allen C Price; Yong-Mei Zhang; Charles O Rock; Stephen W White
Journal:  Structure       Date:  2004-03       Impact factor: 5.006

9.  The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative.

Authors:  Bengt Persson; Yvonne Kallberg; James E Bray; Elspeth Bruford; Stephen L Dellaporta; Angelo D Favia; Roser Gonzalez Duarte; Hans Jörnvall; Kathryn L Kavanagh; Natalia Kedishvili; Michael Kisiela; Edmund Maser; Rebekka Mindnich; Sandra Orchard; Trevor M Penning; Janet M Thornton; Jerzy Adamski; Udo Oppermann
Journal:  Chem Biol Interact       Date:  2008-11-05       Impact factor: 5.192

Review 10.  Aldo-keto reductase (AKR) superfamily: genomics and annotation.

Authors:  Rebekka D Mindnich; Trevor M Penning
Journal:  Hum Genomics       Date:  2009-07       Impact factor: 4.639

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