| Literature DB >> 20507747 |
Soa Fy Andriamandimby1, Armand Eugène Randrianarivo-Solofoniaina, Elisabeth M Jeanmaire, Lisette Ravololomanana, Lanto Tiana Razafimanantsoa, Tsanta Rakotojoelinandrasana, Josette Razainirina, Jonathan Hoffmann, Jean-Pierre Ravalohery, Jean-Théophile Rafisandratantsoa, Pierre E Rollin, Jean-Marc Reynes.
Abstract
During 2 successive rainy seasons, January 2008 through May 2008 and November 2008 through March 2009, Rift Valley fever virus (RVFV) caused outbreaks in Madagascar. Human and animal infections were confirmed on the northern and southern coasts and in the central highlands. Analysis of partial sequences from RVFV strains showed that all were similar to the strains circulating in Kenya during 2006-2007. A national cross-sectional serologic survey among slaughterhouse workers at high risk showed that RVFV circulation during the 2008 outbreaks included all of the Malagasy regions and that the virus has circulated in at least 92 of Madagascar's 111 districts. To better predict and respond to RVF outbreaks in Madagascar, further epidemiologic studies are needed, such as RVFV complete genome analysis, ruminant movement mapping, and surveillance implementation.Entities:
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Year: 2010 PMID: 20507747 PMCID: PMC3086256 DOI: 10.3201/eid1606.091266
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Figure 1Distribution of Rift Valley fever in the 111 administrative districts in Madagascar, 2008 and 2009. Districts with laboratory-diagnosed confirmed or probable cases in humans and/or animals are indicated by yellow (2008), orange (2009), or red (both years). In districts without confirmed or probable cases, antibody data for Rift Valley fever virus immunoglobulin (Ig) levels in serum samples from at-risk professionals are indicated by green (IgM positive only), blue (IgG positive, IgM negative), or violet (IgG and IgM negative). No samples were received from districts shown in white.
Features of 46 sequenced Rift Valley fever viruses, Madagascar, 2008–2009
| Code | Species | Sample type | Sampling date | District of sampling | Coding sequences | ||
|---|---|---|---|---|---|---|---|
| Small | Medium | Large | |||||
| 212-08 | Human | Serum | 2008 Jan 30 | Tolagnaro | Yes | Yes | Yes |
| 406-08 | Bovine | Fetal liver | 2008 Feb 20 | Miarinarivo | Yes | Yes | Yes |
| 413-08 | Bovine | Fetal liver | 2008 Feb 20 | Antsirabe II | Yes | Yes | Yes |
| 427-08 | Human | Serum | 2008 Feb 22 | Anjozorobe | Yes | Yes | Yes |
| 428-08 | Human | Serum | 2008 Feb 15 | Anjozorobe | Yes | Yes | Yes |
| 435-08 | Bovine | Serum | 2008 Feb 22 | Anjozorobe | Yes | No | Yes |
| 437-08 | Bovine | Serum | 2008 Feb 22 | Anjozorobe | Yes | No | No |
| 448-08 | Human | Serum | 2008 Feb 26 | Anjozorobe | Yes | Yes | Yes |
| 449-08 | Human | Serum | 2008 Feb 26 | Anjozorobe | Yes | No | Yes |
| 619-08 | Human | Serum | 2008 Mar 9 | Ankazobe | Yes | Yes | Yes |
| 682-08 | Human | Serum | 2008 Mar 12 | Ambatondrazaka | Yes | Yes | Yes |
| 683-08 | Human | Serum | 2008 Mar 12 | Ambatondrazaka | Yes | Yes | Yes |
| 684-08 | Human | Serum | 2008 Mar 12 | Ambatondrazaka | Yes | Yes | Yes |
| 693-08 | Human | Serum | 2008 Mar 11 | Amparafaravola | Yes | Yes | Yes |
| 776-08 | Human | Serum | 2008 Mar 14 | Ambatondrazaka | Yes | Yes | Yes |
| 779-08 | Human | Serum | 2008 Mar 16 | Amparafaravola | Yes | No | Yes |
| 845-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 846-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 847-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 848-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 849-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 850-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | No |
| 851-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 852-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 853-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 854-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 855-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | Yes | Yes |
| 856-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | No | Yes |
| 857-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | No | No |
| 859-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | No | Yes |
| 863-09 | Human | Serum | 2008 Mar 25 | Antananarivo | Yes | Yes | Yes |
| 878-09 | Human | Serum | 2008 Mar 26 | Amparafaravola | Yes | Yes | Yes |
| 879-08 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
| 889-08 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | No |
| 892-09 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
| 895-09 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
| 897-08 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
| 1464-08 | Human | Serum | 2008 Mar 28 | Tolagnaro | Yes | Yes | Yes |
| 1585-08 | Caprine | Serum | 2008 Apr 13 | Antsiranana I | Yes | Yes | Yes |
| 1586-08 | Human | Serum | 2008 Apr 15 | Antavy Atsimo | Yes | Yes | Yes |
| 1627-08 | Bovine | Serum | 2008 Apr 18 | Ambalavao | Yes | Yes | Yes |
| 1695-08 | Ovine | Serum | 2008 Apr 20 | Antsiranana II | Yes | Yes | Yes |
| 1730-08 | Bovine | Spleen | 2008 Apr 25 | Fianarantsoa I | Yes | Yes | Yes |
| 2032-08 | Human | Serum | 2008 May 25 | Amparafaravola | Yes | Yes | Yes |
| 2033-08 | Human | Serum | 2008 Apr 29 | Amparafaravola | Yes | Yes | Yes |
| 2034-08 | Human | Serum | 2008 Apr 23 | Amparafaravola | Yes | Yes | Yes |
| 6510-08 | Bovine | Liver | 2008 Dec 1 | Fianarantsoa I | Yes | Not done | Not done |
| 6546-08 | Bovine | Liver | 2008 Nov 28 | Fianarantsoa I | Yes | Not done | Not done |
| 6547-08 | Bovine | Liver | 2008 Nov 29 | Fianarantsoa II | Yes | Not done | Not done |
| 6660-08 | Human | Serum | 2008 Dec 12 | Fianarantsoa I | Yes | Not done | Not done |
Figure 2Phylogenetic tree based on the entire small sequences from 33 Rift Valley fever virus strains described by Bird et al. (), from 6 sequences representative of the Kenya 1, 1a, and 2 lineages described by Bird et al. (), and from 1 Madagascar strain circulating in 1991 and 12 Madagascar strains circulating in 2008. Boostrap percentages (from 1,000 resamplings) are indicated at each node. ◆ indicates sequences from the 2006–2007 Kenya-1 lineage, ● indicates sequences from the 2006–2007 Kenya-1a lineage, ▲ indicates sequences from the 2006–2007 Kenya 2 lineage, and ◇ indicates the 2008 Madagascar sequences. Scale bar indicates nucleotide substitutions per site.