Literature DB >> 20499945

Accurate acceleration of kinetic Monte Carlo simulations through the modification of rate constants.

Abhijit Chatterjee1, Arthur F Voter.   

Abstract

We present a novel computational algorithm called the accelerated superbasin kinetic Monte Carlo (AS-KMC) method that enables a more efficient study of rare-event dynamics than the standard KMC method while maintaining control over the error. In AS-KMC, the rate constants for processes that are observed many times are lowered during the course of a simulation. As a result, rare processes are observed more frequently than in KMC and the time progresses faster. We first derive error estimates for AS-KMC when the rate constants are modified. These error estimates are next employed to develop a procedure for lowering process rates with control over the maximum error. Finally, numerical calculations are performed to demonstrate that the AS-KMC method captures the correct dynamics, while providing significant CPU savings over KMC in most cases. We show that the AS-KMC method can be employed with any KMC model, even when no time scale separation is present (although in such cases no computational speed-up is observed), without requiring the knowledge of various time scales present in the system.

Mesh:

Year:  2010        PMID: 20499945     DOI: 10.1063/1.3409606

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  1 in total

1.  A new class of enhanced kinetic sampling methods for building Markov state models.

Authors:  Arti Bhoutekar; Susmita Ghosh; Swati Bhattacharya; Abhijit Chatterjee
Journal:  J Chem Phys       Date:  2017-10-21       Impact factor: 3.488

  1 in total

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