Literature DB >> 20495028

Thermogemmatispora onikobensis gen. nov., sp. nov. and Thermogemmatispora foliorum sp. nov., isolated from fallen leaves on geothermal soils, and description of Thermogemmatisporaceae fam. nov. and Thermogemmatisporales ord. nov. within the class Ktedonobacteria.

Shuhei Yabe1, Yoshifumi Aiba2, Yasuteru Sakai1, Masaru Hazaka1, Akira Yokota2.   

Abstract

Two thermophilic, Gram-stain-positive, sporulating bacterial strains, which formed branched vegetative and aerial mycelia, were isolated from fallen leaves sampled from geothermal soils and designated ONI-1(T) and ONI-5(T). Strain ONI-1(T) grew at 50-74 °C, with optimum growth at 60-65 °C, and strain ONI-5(T) grew at 45-74 °C, with optimum growth at 60-65 °C. The pH range for growth of the strains was pH 4.6-8.0, with optimum growth at pH 7.0. The DNA G+C contents of strains ONI-1(T) and ONI-5(T) were 60.2 and 58.1 mol%, respectively. The major fatty acid was iso-C(17 : 0) and the major menaquinone was MK-9(H(2)). The cell walls of the strains contained glutamic acid, serine, glycine, histidine, alanine and ornithine. The polar lipids consisted of phosphatidylinositol, phosphatidylglycerol and a glycolipid. The cell-wall sugar was rhamnose. Detailed phylogenetic analysis based on 16S rRNA gene sequences indicated that the strains belong to the class Ktedonobacteria and that strains ONI-1(T) and ONI-5(T) are most closely related to Thermosporothrix hazakensis SK20-1(T) (85.3 and 84.5 % sequence similarity, respectively). 16S rRNA gene sequence similarity between the two strains was 96.6 %. Based on the phenotypic features and phylogenetic position, we propose that strains ONI-1(T) and ONI-5(T) constitute a novel genus containing two novel species, for which we propose the names Thermogemmatispora onikobensis gen. nov., sp. nov. (the type species; type strain ONI-1(T)  = JCM 16817(T)  = KCTC 19768(T)) and Thermogemmatispora foliorum sp. nov. (type strain ONI-5(T)  = JCM 16818(T)  = KCTC 19767(T)), within the new family Thermogemmatisporaceae fam. nov. and order Thermogemmatisporales ord. nov.

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Year:  2010        PMID: 20495028     DOI: 10.1099/ijs.0.024877-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  13 in total

1.  Comparison of Rock Varnish Bacterial Communities with Surrounding Non-Varnished Rock Surfaces: Taxon-Specific Analysis and Morphological Description.

Authors:  Alfonso Esposito; Engy Ahmed; Sonia Ciccazzo; Johannes Sikorski; Jörg Overmann; Sara J M Holmström; Lorenzo Brusetti
Journal:  Microb Ecol       Date:  2015-04-30       Impact factor: 4.552

2.  A novel fatty acid, 12,17-dimethyloctadecanoic acid, from the extremophile Thermogemmatispora sp. (Strain T81).

Authors:  M Vyssotski; J Ryan; K Lagutin; H Wong; X Morgan; M Stott
Journal:  Lipids       Date:  2012-04-05       Impact factor: 1.880

3.  Temperature responses of carbon monoxide and hydrogen uptake by vegetated and unvegetated volcanic cinders.

Authors:  Caitlin E King; Gary M King
Journal:  ISME J       Date:  2012-01-19       Impact factor: 10.302

4.  Novel long-chain diol phospholipids from some bacteria belonging to the class Thermomicrobia.

Authors:  Kirill Lagutin; Andrew MacKenzie; Karen M Houghton; Matthew B Stott; Mikhail Vyssotski
Journal:  Lipids       Date:  2014-12-16       Impact factor: 1.880

5.  Thermophilic Chloroflexi Dominate in the Microbial Community Associated with Coal-Fire Gas Vents in the Kuznetsk Coal Basin, Russia.

Authors:  Vitaly V Kadnikov; Andrey V Mardanov; Alexey V Beletsky; Mikhail A Grigoriev; Olga V Karnachuk; Nikolai V Ravin
Journal:  Microorganisms       Date:  2021-04-28

6.  Depth-dependent geochemical and microbiological gradients in Fe(III) deposits resulting from coal mine-derived acid mine drainage.

Authors:  Justin S Brantner; Zachary J Haake; John E Burwick; Christopher M Menge; Shane T Hotchkiss; John M Senko
Journal:  Front Microbiol       Date:  2014-05-14       Impact factor: 5.640

7.  Microbial diversity in a Venezuelan orthoquartzite cave is dominated by the Chloroflexi (Class Ktedonobacterales) and Thaumarchaeota Group I.1c.

Authors:  Hazel A Barton; Juan G Giarrizzo; Paula Suarez; Charles E Robertson; Mark J Broering; Eric D Banks; Parag A Vaishampayan; Kasthisuri Venkateswaran
Journal:  Front Microbiol       Date:  2014-11-26       Impact factor: 5.640

8.  Draft Genome Sequence of Thermogemmatispora onikobensis NBRC 111776T, an Aerial Mycelium- and Spore-Forming Thermophilic Bacterium Belonging to the Class Ktedonobacteria.

Authors:  Hisayuki Komaki; Akira Hosoyama; Shuhei Yabe; Akira Yokota; Yoshihito Uchino; Hideaki Takano
Journal:  Genome Announc       Date:  2016-10-13

9.  Diversity of Ktedonobacteria with Actinomycetes-Like Morphology in Terrestrial Environments.

Authors:  Shuhei Yabe; Yasuteru Sakai; Keietsu Abe; Akira Yokota
Journal:  Microbes Environ       Date:  2017-03-17       Impact factor: 2.912

10.  Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons.

Authors:  Tess E Brewer; Emma L Aronson; Keshav Arogyaswamy; Sharon A Billings; Jon K Botthoff; Ashley N Campbell; Nicholas C Dove; Dawson Fairbanks; Rachel E Gallery; Stephen C Hart; Jason Kaye; Gary King; Geoffrey Logan; Kathleen A Lohse; Mia R Maltz; Emilio Mayorga; Caitlin O'Neill; Sarah M Owens; Aaron Packman; Jennifer Pett-Ridge; Alain F Plante; Daniel D Richter; Whendee L Silver; Wendy H Yang; Noah Fierer
Journal:  mBio       Date:  2019-10-01       Impact factor: 7.867

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