Literature DB >> 20488239

Toward routine, DNA-based detection methods for marine pests.

Nathan J Bott1, Kathy M Ophel-Keller, Michael T Sierp, Keith P Rowling, Alan C McKay, Maylene G K Loo, Jason E Tanner, Marty R Deveney.   

Abstract

Marine pest incursions can cause significant ongoing damage to aquaculture, biodiversity, fisheries habitat, infrastructure and social amenity. They represent a significant and ongoing economic burden. Marine pests can be introduced by several vectors including aquaculture, aquarium trading, commercial shipping, fishing, floating debris, mining activities and recreational boating. Despite the inherent risks, there is currently relatively little routine surveillance of marine pest species conducted in the majority of countries worldwide. Accurate and rapid identification of marine pest species is central to early detection and management. Traditional techniques (e.g. physical sampling and sorting), have limitations, which has motivated some progress towards the development of molecular diagnostic tools. This review provides a brief account of the techniques traditionally used for detection and describes developments in molecular-based methods for the detection and surveillance of marine pest species. Recent advances provide a platform for the development of practical, specific, sensitive and rapid diagnosis and surveillance tools for marine pests for use in effective prevention and control strategies. Crown
Copyright © 2010. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20488239     DOI: 10.1016/j.biotechadv.2010.05.018

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  11 in total

Review 1.  Molecular detection, quantification, and diversity evaluation of microalgae.

Authors:  Vinitha Ebenezer; Linda K Medlin; Jang-Seu Ki
Journal:  Mar Biotechnol (NY)       Date:  2011-12-28       Impact factor: 3.619

2.  Molecular detection of invasive species in heterogeneous mixtures using a microfluidic carbon nanotube platform.

Authors:  Andrew R Mahon; Matthew A Barnes; Satyajyoti Senapati; Jeffrey L Feder; John A Darling; Hsueh-Chia Chang; David M Lodge
Journal:  PLoS One       Date:  2011-02-18       Impact factor: 3.240

3.  Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons.

Authors:  Magdalena Guardiola; María Jesús Uriz; Pierre Taberlet; Eric Coissac; Owen Simon Wangensteen; Xavier Turon
Journal:  PLoS One       Date:  2015-10-05       Impact factor: 3.240

4.  Evaluating detection limits of next-generation sequencing for the surveillance and monitoring of international marine pests.

Authors:  Xavier Pochon; Nathan J Bott; Kirsty F Smith; Susanna A Wood
Journal:  PLoS One       Date:  2013-09-04       Impact factor: 3.240

5.  The Application of Nanopore Sequencing Technology to the Study of Dinoflagellates: A Proof of Concept Study for Rapid Sequence-Based Discrimination of Potentially Harmful Algae.

Authors:  Robert G Hatfield; Frederico M Batista; Timothy P Bean; Vera G Fonseca; Andres Santos; Andrew D Turner; Adam Lewis; Karl J Dean; Jaime Martinez-Urtaza
Journal:  Front Microbiol       Date:  2020-05-08       Impact factor: 5.640

6.  Development of a TaqMan qPCR assay for detection of Alexandrium spp and application to harmful algal bloom monitoring.

Authors:  Robert G Hatfield; Timothy Bean; Andrew D Turner; David N Lees; James Lowther; Adam Lewis; Craig Baker-Austin
Journal:  Toxicon X       Date:  2019-03-08

7.  Nucleic acids-based tools for ballast water surveillance, monitoring, and research.

Authors:  John A Darling; Raymond M Frederick
Journal:  J Sea Res       Date:  2018-03       Impact factor: 2.108

8.  Historical baselines in marine bioinvasions: Implications for policy and management.

Authors:  Henn Ojaveer; Bella S Galil; James T Carlton; Heidi Alleway; Philippe Goulletquer; Maiju Lehtiniemi; Agnese Marchini; Whitman Miller; Anna Occhipinti-Ambrogi; Melita Peharda; Gregory M Ruiz; Susan L Williams; Anastasija Zaiko
Journal:  PLoS One       Date:  2018-08-16       Impact factor: 3.240

9.  Deciphering host-parasitoid interactions and parasitism rates of crop pests using DNA metabarcoding.

Authors:  Ahmadou Sow; Thierry Brévault; Laure Benoit; Marie-Pierre Chapuis; Maxime Galan; Armelle Coeur d'acier; Gérard Delvare; Mbacké Sembène; Julien Haran
Journal:  Sci Rep       Date:  2019-03-06       Impact factor: 4.379

10.  Comparative analysis of freshwater phytoplankton communities in two lakes of Burabay National Park using morphological and molecular approaches.

Authors:  Dmitry V Malashenkov; Veronika Dashkova; Kymbat Zhakupova; Ivan A Vorobjev; Natasha S Barteneva
Journal:  Sci Rep       Date:  2021-08-09       Impact factor: 4.379

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