Literature DB >> 20485461

Computational methods for optical molecular imaging.

Duan Chen1, Guo-Wei Wei, Wen-Xiang Cong, Ge Wang.   

Abstract

A new computational technique, the matched interface and boundary (MIB) method, is presented to model the photon propagation in biological tissue for the optical molecular imaging. Optical properties have significant differences in different organs of small animals, resulting in discontinuous coefficients in the diffusion equation model. Complex organ shape of small animal induces singularities of the geometric model as well. The MIB method is designed as a dimension splitting approach to decompose a multidimensional interface problem into one-dimensional ones. The methodology simplifies the topological relation near an interface and is able to handle discontinuous coefficients and complex interfaces with geometric singularities. In the present MIB method, both the interface jump condition and the photon flux jump conditions are rigorously enforced at the interface location by using only the lowest-order jump conditions. This solution near the interface is smoothly extended across the interface so that central finite difference schemes can be employed without the loss of accuracy. A wide range of numerical experiments are carried out to validate the proposed MIB method. The second-order convergence is maintained in all benchmark problems. The fourth-order convergence is also demonstrated for some three-dimensional problems. The robustness of the proposed method over the variable strength of the linear term of the diffusion equation is also examined. The performance of the present approach is compared with that of the standard finite element method. The numerical study indicates that the proposed method is a potentially efficient and robust approach for the optical molecular imaging.

Entities:  

Year:  2009        PMID: 20485461      PMCID: PMC2871344          DOI: 10.1002/cnm.1164

Source DB:  PubMed          Journal:  Commun Numer Methods Eng        ISSN: 1069-8299


  15 in total

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Review 5.  Molecular imaging in the clinical arena.

Authors:  Farouc A Jaffer; Ralph Weissleder
Journal:  JAMA       Date:  2005-02-16       Impact factor: 56.272

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7.  Treatment of geometric singularities in implicit solvent models.

Authors:  Sining Yu; Weihua Geng; G W Wei
Journal:  J Chem Phys       Date:  2007-06-28       Impact factor: 3.488

8.  A finite-element-based reconstruction method for 3D fluorescence tomography.

Authors:  Alexander Cong; Ge Wang
Journal:  Opt Express       Date:  2005-11-28       Impact factor: 3.894

9.  Treatment of charge singularities in implicit solvent models.

Authors:  Weihua Geng; Sining Yu; Guowei Wei
Journal:  J Chem Phys       Date:  2007-09-21       Impact factor: 3.488

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  7 in total

1.  Differential geometry based solvation model II: Lagrangian formulation.

Authors:  Zhan Chen; Nathan A Baker; G W Wei
Journal:  J Math Biol       Date:  2011-01-30       Impact factor: 2.259

2.  Parameter optimization in differential geometry based solvation models.

Authors:  Bao Wang; G W Wei
Journal:  J Chem Phys       Date:  2015-10-07       Impact factor: 3.488

3.  Modeling and simulation of electronic structure, material interface and random doping in nano electronic devices.

Authors:  Duan Chen; Guo-Wei Wei
Journal:  J Comput Phys       Date:  2010-06-20       Impact factor: 3.553

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Authors:  Duan Chen; Zhan Chen; Changjun Chen; Weihua Geng; Guo-Wei Wei
Journal:  J Comput Chem       Date:  2010-09-15       Impact factor: 3.376

6.  MIB method for elliptic equations with multi-material interfaces.

Authors:  Kelin Xia; Meng Zhan; Guo-Wei Wei
Journal:  J Comput Phys       Date:  2011-06-01       Impact factor: 3.553

7.  Differential geometry based solvation model I: Eulerian formulation.

Authors:  Zhan Chen; Nathan A Baker; G W Wei
Journal:  J Comput Phys       Date:  2010-11-01       Impact factor: 3.553

  7 in total

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