Literature DB >> 20484971

A comprehensive glossary of autophagy-related molecules and processes.

Daniel J Klionsky1, Patrice Codogno, Ana Maria Cuervo, Vojo Deretic, Zvulun Elazar, Juan Fueyo-Margareto, David A Gewirtz, Guido Kroemer, Beth Levine, Noboru Mizushima, David C Rubinsztein, Michael Thumm, Sharon A Tooze.   

Abstract

Autophagy is a rapidly expanding field in the sense that our knowledge about the molecular mechanism and its connections to a wide range of physiological processes has increased substantially in the past decade. Similarly, the vocabulary associated with autophagy has grown concomitantly. This fact makes it difficult for readers, even those who work in the field, to keep up with the ever-expanding terminology associated with the various autophagy-related processes. Accordingly, we have developed a comprehensive glossary of autophagy-related terms that is meant to provide a quick reference for researchers who need a brief reminder of the regulatory effects of transcription factors or chemical agents that induce or inhibit autophagy, the function of the autophagy-related proteins, or the role of accessory machinery or structures that are associated with autophagy.

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Year:  2010        PMID: 20484971      PMCID: PMC3652604          DOI: 10.4161/auto.6.4.12244

Source DB:  PubMed          Journal:  Autophagy        ISSN: 1554-8627            Impact factor:   16.016


  176 in total

1.  Apg13p and Vac8p are part of a complex of phosphoproteins that are required for cytoplasm to vacuole targeting.

Authors:  S V Scott; D C Nice; J J Nau; L S Weisman; Y Kamada; I Keizer-Gunnink; T Funakoshi; M Veenhuis; Y Ohsumi; D J Klionsky
Journal:  J Biol Chem       Date:  2000-08-18       Impact factor: 5.157

2.  LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.

Authors:  Y Kabeya; N Mizushima; T Ueno; A Yamamoto; T Kirisako; T Noda; E Kominami; Y Ohsumi; T Yoshimori
Journal:  EMBO J       Date:  2000-11-01       Impact factor: 11.598

3.  Erk1/2-dependent phosphorylation of Galpha-interacting protein stimulates its GTPase accelerating activity and autophagy in human colon cancer cells.

Authors:  E Ogier-Denis; S Pattingre; J El Benna; P Codogno
Journal:  J Biol Chem       Date:  2000-12-15       Impact factor: 5.157

4.  The itinerary of a vesicle component, Aut7p/Cvt5p, terminates in the yeast vacuole via the autophagy/Cvt pathways.

Authors:  W P Huang; S V Scott; J Kim; D J Klionsky
Journal:  J Biol Chem       Date:  2000-02-25       Impact factor: 5.157

5.  A ubiquitin-like system mediates protein lipidation.

Authors:  Y Ichimura; T Kirisako; T Takao; Y Satomi; Y Shimonishi; N Ishihara; N Mizushima; I Tanida; E Kominami; M Ohsumi; T Noda; Y Ohsumi
Journal:  Nature       Date:  2000-11-23       Impact factor: 49.962

6.  Accumulation of autophagic vacuoles and cardiomyopathy in LAMP-2-deficient mice.

Authors:  Y Tanaka; G Guhde; A Suter; E L Eskelinen; D Hartmann; R Lüllmann-Rauch; P M Janssen; J Blanz; K von Figura; P Saftig
Journal:  Nature       Date:  2000-08-24       Impact factor: 49.962

7.  Induction of autophagy and inhibition of tumorigenesis by beclin 1.

Authors:  X H Liang; S Jackson; M Seaman; K Brown; B Kempkes; H Hibshoosh; B Levine
Journal:  Nature       Date:  1999-12-09       Impact factor: 49.962

8.  The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway.

Authors:  T Kirisako; Y Ichimura; H Okada; Y Kabeya; N Mizushima; T Yoshimori; M Ohsumi; T Takao; T Noda; Y Ohsumi
Journal:  J Cell Biol       Date:  2000-10-16       Impact factor: 10.539

9.  Apg9p/Cvt7p is an integral membrane protein required for transport vesicle formation in the Cvt and autophagy pathways.

Authors:  T Noda; J Kim; W P Huang; M Baba; C Tokunaga; Y Ohsumi; D J Klionsky
Journal:  J Cell Biol       Date:  2000-02-07       Impact factor: 10.539

10.  The breakdown of autophagic vesicles inside the vacuole depends on Aut4p.

Authors:  I Suriapranata; U D Epple; D Bernreuther; M Bredschneider; K Sovarasteanu; M Thumm
Journal:  J Cell Sci       Date:  2000-11       Impact factor: 5.285

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  75 in total

1.  Insights into noncanonical E1 enzyme activation from the structure of autophagic E1 Atg7 with Atg8.

Authors:  Seung Beom Hong; Byeong-Won Kim; Kyung-Eun Lee; Se Woong Kim; Hyesung Jeon; Joon Kim; Hyun Kyu Song
Journal:  Nat Struct Mol Biol       Date:  2011-11-06       Impact factor: 15.369

Review 2.  Mechanisms of mitophagy.

Authors:  Richard J Youle; Derek P Narendra
Journal:  Nat Rev Mol Cell Biol       Date:  2011-01       Impact factor: 94.444

3.  The autophagy connection.

Authors:  Daniel J Klionsky
Journal:  Dev Cell       Date:  2010-07-20       Impact factor: 12.270

Review 4.  Cellular strategies of protein quality control.

Authors:  Bryan Chen; Marco Retzlaff; Thomas Roos; Judith Frydman
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-08-01       Impact factor: 10.005

Review 5.  Lysosomal Quality Control in Prion Diseases.

Authors:  Priyanka Majumder; Oishee Chakrabarti
Journal:  Mol Neurobiol       Date:  2017-04-18       Impact factor: 5.590

6.  Look people, "Atg" is an abbreviation for "autophagy-related." That's it.

Authors:  Daniel J Klionsky
Journal:  Autophagy       Date:  2012-08-14       Impact factor: 16.016

7.  Identification and functional analysis of Joka2, a tobacco member of the family of selective autophagy cargo receptors.

Authors:  Katarzyna Zientara-Rytter; Jolanta Lukomska; Grzegorz Moniuszko; Rafał Gwozdecki; Przemysław Surowiecki; Małgorzata Lewandowska; Frantz Liszewska; Anna Wawrzyńska; Agnieszka Sirko
Journal:  Autophagy       Date:  2011-10-01       Impact factor: 16.016

8.  Autophagy in Apicomplexa: a life sustaining death mechanism?

Authors:  Anthony P Sinai; Paul D Roepe
Journal:  Trends Parasitol       Date:  2012-07-18

9.  Raf/MEK/ERK can regulate cellular levels of LC3B and SQSTM1/p62 at expression levels.

Authors:  Jin-Hwan Kim; Seung-Keun Hong; Pui-Kei Wu; Alexsia L Richards; William T Jackson; Jong-In Park
Journal:  Exp Cell Res       Date:  2014-08-14       Impact factor: 3.905

Review 10.  Disorders of lysosomal acidification-The emerging role of v-ATPase in aging and neurodegenerative disease.

Authors:  Daniel J Colacurcio; Ralph A Nixon
Journal:  Ageing Res Rev       Date:  2016-05-16       Impact factor: 10.895

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