Literature DB >> 20484811

The lines-of-force landscape of interactions between molecules in crystals; cohesive versus tolerant and 'collateral damage' contact.

Angelo Gavezzotti1.   

Abstract

A quantitative analysis of relative stabilities in organic crystal structures is possible by means of reliable calculations of interaction energies between pairs of molecules. Such calculations have been performed by the PIXEL method for 1108 non-ionic and 98 ionic organic crystals, yielding total energies and separate Coulombic polarization and dispersive contributions. A classification of molecule-molecule interactions emerges based on pair energy and its first derivative, the interaction force, which is estimated here explicitly along an approximate stretching path. When molecular separation is not at the minimum-energy value, as frequently happens, forces may be attractive or repulsive. This information provides a fine structural fingerprint and may be relevant to the mechanical properties of materials. The calculations show that the first coordination shell includes destabilizing contacts in approximately 9% of crystal structures for compounds with highly polar chemical groups (e.g. CN, NO(2), SO(2)). Calculations also show many pair contacts with weakly stabilizing (neutral) energies; such fine modulation is presumably what makes crystal structure prediction so difficult. Ionic organic salts or zwitterions, including small peptides, show a Madelung-mode pairing of opposite ions where the total lattice energy is stabilized from sums of strongly repulsive and strongly attractive interactions. No obvious relationships between atom-atom distances and interaction energies emerge, so analyses of crystal packing in terms of geometrical parameters alone should be conducted with due care.

Entities:  

Year:  2010        PMID: 20484811     DOI: 10.1107/S0108768110008074

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  7 in total

1.  Packing Preferences of Chalcones: A Model Conjugated Pharmaceutical Scaffold.

Authors:  Louise S Price; Sarah L Price
Journal:  Cryst Growth Des       Date:  2022-02-11       Impact factor: 4.010

2.  Atom interaction propensities of oxygenated chemical functions in crystal packings.

Authors:  Christian Jelsch; Yvon Bibila Mayaya Bisseyou
Journal:  IUCrJ       Date:  2017-01-21       Impact factor: 4.769

3.  Weak inter-actions in crystals: old concepts, new developments.

Authors:  Andrei S Batsanov
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-04-17

4.  Usage of Quantum Chemical Methods to Understand the Formation of Concomitant Polymorphs of Acetyl 2-(N-(2-Fluorophenyl)imino)coumarin-3-carboxamide.

Authors:  Svitlana V Shishkina; Vyacheslav N Baumer; Sergiy M Kovalenko; Pavel V Trostianko; Natalya D Bunyatyan
Journal:  ACS Omega       Date:  2021-01-25

5.  Behavior of Occupied and Void Space in Molecular Crystal Structures at High Pressure.

Authors:  Cameron J G Wilson; Tomas Cervenka; Peter A Wood; Simon Parsons
Journal:  Cryst Growth Des       Date:  2022-03-22       Impact factor: 4.076

6.  Crystal structure of 8-hex-yloxy-2-[(Z)-2-(naph-thal-en-2-yl)ethen-yl]quinoline.

Authors:  Xiaozhou Liu; Lu Wang; Ying Feng; Deliang Cui; Zhi Liu
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-07-05

7.  The enrichment ratio of atomic contacts in crystals, an indicator derived from the Hirshfeld surface analysis.

Authors:  Christian Jelsch; Krzysztof Ejsmont; Loïc Huder
Journal:  IUCrJ       Date:  2014-02-28       Impact factor: 4.769

  7 in total

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