Literature DB >> 20478920

Sharing and reusing cardiovascular anatomical models over the Web: a step towards the implementation of the virtual physiological human project.

Daniele Gianni1, Steve McKeever, Tommy Yu, Randall Britten, Hervé Delingette, Alejandro Frangi, Peter Hunter, Nicolas Smith.   

Abstract

Sharing and reusing anatomical models over the Web offers a significant opportunity to progress the investigation of cardiovascular diseases. However, the current sharing methodology suffers from the limitations of static model delivery (i.e. embedding static links to the models within Web pages) and of a disaggregated view of the model metadata produced by publications and cardiac simulations in isolation. In the context of euHeart--a research project targeting the description and representation of cardiovascular models for disease diagnosis and treatment purposes--we aim to overcome the above limitations with the introduction of euHeartDB, a Web-enabled database for anatomical models of the heart. The database implements a dynamic sharing methodology by managing data access and by tracing all applications. In addition to this, euHeartDB establishes a knowledge link with the physiome model repository by linking geometries to CellML models embedded in the simulation of cardiac behaviour. Furthermore, euHeartDB uses the exFormat--a preliminary version of the interoperable FieldML data format--to effectively promote reuse of anatomical models, and currently incorporates Continuum Mechanics, Image Analysis, Signal Processing and System Identification Graphical User Interface (CMGUI), a rendering engine, to provide three-dimensional graphical views of the models populating the database. Currently, euHeartDB stores 11 cardiac geometries developed within the euHeart project consortium.

Entities:  

Mesh:

Year:  2010        PMID: 20478920     DOI: 10.1098/rsta.2010.0025

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  12 in total

Review 1.  Computational modeling of the human atrial anatomy and electrophysiology.

Authors:  Olaf Dössel; Martin W Krueger; Frank M Weber; Mathias Wilhelms; Gunnar Seemann
Journal:  Med Biol Eng Comput       Date:  2012-06-21       Impact factor: 2.602

Review 2.  Theoretical models for coronary vascular biomechanics: progress & challenges.

Authors:  Sarah L Waters; Jordi Alastruey; Daniel A Beard; Peter H M Bovendeerd; Peter F Davies; Girija Jayaraman; Oliver E Jensen; Jack Lee; Kim H Parker; Aleksander S Popel; Timothy W Secomb; Maria Siebes; Spencer J Sherwin; Rebecca J Shipley; Nicolas P Smith; Frans N van de Vosse
Journal:  Prog Biophys Mol Biol       Date:  2010-10-30       Impact factor: 3.667

3.  Share and enjoy: anatomical models database--generating and sharing cardiovascular model data using web services.

Authors:  Eric Kerfoot; Pablo Lamata; Steve Niederer; Rod Hose; Jos Spaan; Nic Smith
Journal:  Med Biol Eng Comput       Date:  2013-02-23       Impact factor: 2.602

4.  OntoVIP: an ontology for the annotation of object models used for medical image simulation.

Authors:  Bernard Gibaud; Germain Forestier; Hugues Benoit-Cattin; Frédéric Cervenansky; Patrick Clarysse; Denis Friboulet; Alban Gaignard; Patrick Hugonnard; Carole Lartizien; Hervé Liebgott; Johan Montagnat; Joachim Tabary; Tristan Glatard
Journal:  J Biomed Inform       Date:  2014-07-16       Impact factor: 6.317

5.  Big heart data: advancing health informatics through data sharing in cardiovascular imaging.

Authors:  Avan Suinesiaputra; Pau Medrano-Gracia; Brett R Cowan; Alistair A Young
Journal:  IEEE J Biomed Health Inform       Date:  2014-11-14       Impact factor: 5.772

6.  euHeart: personalized and integrated cardiac care using patient-specific cardiovascular modelling.

Authors:  Nic Smith; Adelaide de Vecchi; Matthew McCormick; David Nordsletten; Oscar Camara; Alejandro F Frangi; Hervé Delingette; Maxime Sermesant; Jatin Relan; Nicholas Ayache; Martin W Krueger; Walther H W Schulze; Rod Hose; Israel Valverde; Philipp Beerbaum; Cristina Staicu; Maria Siebes; Jos Spaan; Peter Hunter; Juergen Weese; Helko Lehmann; Dominique Chapelle; Reza Rezavi
Journal:  Interface Focus       Date:  2011-04-01       Impact factor: 3.906

7.  Towards personalized clinical in-silico modeling of atrial anatomy and electrophysiology.

Authors:  Martin W Krueger; Walther H W Schulze; Kawal S Rhode; Reza Razavi; Gunnar Seemann; Olaf Dössel
Journal:  Med Biol Eng Comput       Date:  2012-10-16       Impact factor: 2.602

8.  Module-based multiscale simulation of angiogenesis in skeletal muscle.

Authors:  Gang Liu; Amina A Qutub; Prakash Vempati; Feilim Mac Gabhann; Aleksander S Popel
Journal:  Theor Biol Med Model       Date:  2011-04-04       Impact factor: 2.432

9.  An automatic service for the personalization of ventricular cardiac meshes.

Authors:  Pablo Lamata; Matthew Sinclair; Eric Kerfoot; Angela Lee; Andrew Crozier; Bojan Blazevic; Sander Land; Adam J Lewandowski; David Barber; Steve Niederer; Nic Smith
Journal:  J R Soc Interface       Date:  2013-12-11       Impact factor: 4.118

10.  FieldML, a proposed open standard for the Physiome project for mathematical model representation.

Authors:  Randall D Britten; G Richard Christie; Caton Little; Andrew K Miller; Chris Bradley; Alan Wu; Tommy Yu; Peter Hunter; Poul Nielsen
Journal:  Med Biol Eng Comput       Date:  2013-07-31       Impact factor: 2.602

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.