Literature DB >> 20459110

Oligopyrenotides: abiotic, polyanionic oligomers with nucleic acid-like structural properties.

Robert Häner1, Florian Garo, Daniel Wenger, Vladimir L Malinovskii.   

Abstract

Oligopyrenotides, abiotic oligomers that exhibit significant structural analogies to the nucleic acids, are described. They are composed of achiral, phosphodiester-linked pyrene building blocks and a single chiral 1,2-diaminocyclohexane unit. These oligomers form stable hybrids in aqueous solution. Hybridization is based on stacking interactions of the pyrene building blocks. They show thermal denaturation/renaturation behavior that closely resembles DNA and RNA hybridization. In addition, oligopyrenotides display salt-concentration-dependent structural polymorphism. Thus, they possess a number of structural attributes that are typical of nucleic acids and therefore may serve as model systems for the design of artificial self-replicating systems.

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Year:  2010        PMID: 20459110     DOI: 10.1021/ja102042p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

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Review 3.  Pyrene-functionalized oligonucleotides and locked nucleic acids (LNAs): tools for fundamental research, diagnostics, and nanotechnology.

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4.  Recognition of mixed-sequence DNA duplexes: design guidelines for invaders based on 2'-O-(pyren-1-yl)methyl-RNA monomers.

Authors:  Saswata Karmakar; Dale C Guenther; Patrick J Hrdlicka
Journal:  J Org Chem       Date:  2013-11-20       Impact factor: 4.354

5.  Identification and characterization of second-generation invader locked nucleic acids (LNAs) for mixed-sequence recognition of double-stranded DNA.

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7.  C5-alkynyl-functionalized α-L-LNA: synthesis, thermal denaturation experiments and enzymatic stability.

Authors:  Pawan Kumar; Bharat Baral; Brooke A Anderson; Dale C Guenther; Michael E Østergaard; Pawan K Sharma; Patrick J Hrdlicka
Journal:  J Org Chem       Date:  2014-05-13       Impact factor: 4.354

8.  Pyrene-nucleobase conjugates: synthesis, oligonucleotide binding and confocal bioimaging studies.

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Journal:  Beilstein J Org Chem       Date:  2017-11-28       Impact factor: 2.883

9.  Silica Mineralization of DNA-Inspired 1D and 2D Supramolecular Polymers.

Authors:  Mykhailo Vybornyi; Yuliia Vyborna; Robert Häner
Journal:  ChemistryOpen       Date:  2017-06-23       Impact factor: 2.911

10.  Influence of perylenediimide-pyrene supramolecular interactions on the stability of DNA-based hybrids: Importance of electrostatic complementarity.

Authors:  Christian B Winiger; Simon M Langenegger; Oleg Khorev; Robert Häner
Journal:  Beilstein J Org Chem       Date:  2014-07-11       Impact factor: 2.883

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