Literature DB >> 20458494

Characterization of NAC domain transcription factors implicated in control of vascular cell differentiation in Arabidopsis and Populus.

Emily H Grant1, Takeshi Fujino, Eric P Beers, Amy M Brunner.   

Abstract

Wood has a wide variety of uses and is arguably the most important renewable raw material. The composition of xylem cell types in wood determines the utility of different types of wood for distinct commercial applications. Using expression profiling and phylogenetic analysis, we identified many xylem-associated regulatory genes that may control the differentiation of cells involved in wood formation in Arabidopsis and poplar. Prominent among these are NAC domain transcription factors (NACs). We studied NACs with putative involvement as negative (XND1 from Arabidopsis and its poplar orthologs PopNAC118, PopNAC122, PopNAC128, PopNAC129), or positive (SND2 and SND3 from Arabidopsis and their poplar orthologs PopNAC105, PopNAC154, PopNAC156, PopNAC157) regulators of secondary cell wall synthesis. Using quantitative PCR and in situ hybridization, we evaluated expression of these Populus NACs in a developmental gradient and in association with reaction wood and found that representatives from both groups were associated with wood-forming tissue and phloem fibers. Additionally, XND1 orthologs were expressed in mesophyll cells of developing leaves. We prepared transgenic Arabidopsis and poplar plants for overexpression of selected NACs. XND1 overexpression in poplar resulted in severe stunting. Additionally, poplar XND1 overexpressors lacked phloem fibers and showed reductions in cell size and number, vessel number, and frequency of rays in the xylem. Overexpression of PopNAC122, an XND1 ortholog, yielded an analogous phenotype in Arabidopsis. Overexpression of PopNAC154 in poplar reduced height growth and increased the relative proportion of bark versus xylem.

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Year:  2010        PMID: 20458494     DOI: 10.1007/s00425-010-1181-2

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  33 in total

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Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

2.  Modeling gene and genome duplications in eukaryotes.

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3.  Molecular changes associated with the setting up of secondary growth in aspen.

Authors:  Damien van Raemdonck; Edouard Pesquet; Sophie Cloquet; Hans Beeckman; Wout Boerjan; Deborah Goffner; Mondher El Jaziri; Marie Baucher
Journal:  J Exp Bot       Date:  2005-07-04       Impact factor: 6.992

4.  Poplar (Populus spp.).

Authors:  Richard Meilan; Caiping Ma
Journal:  Methods Mol Biol       Date:  2006

5.  Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis.

Authors:  Sara Andersson-Gunnerås; Ewa J Mellerowicz; Jonathan Love; Bo Segerman; Yasunori Ohmiya; Pedro M Coutinho; Peter Nilsson; Bernard Henrissat; Thomas Moritz; Björn Sundberg
Journal:  Plant J       Date:  2006-01       Impact factor: 6.417

6.  pBINPLUS: an improved plant transformation vector based on pBIN19.

Authors:  F A van Engelen; J W Molthoff; A J Conner; J P Nap; A Pereira; W J Stiekema
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7.  NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis.

Authors:  Nobutaka Mitsuda; Akira Iwase; Hiroyuki Yamamoto; Masato Yoshida; Motoaki Seki; Kazuo Shinozaki; Masaru Ohme-Takagi
Journal:  Plant Cell       Date:  2007-01-19       Impact factor: 11.277

8.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

9.  Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa.

Authors:  Palitha Dharmawardhana; Amy M Brunner; Steven H Strauss
Journal:  BMC Genomics       Date:  2010-03-04       Impact factor: 3.969

10.  Alcohol-inducible gene expression in transgenic Populus.

Authors:  S A Filichkin; R Meilan; V B Busov; C Ma; A M Brunner; S H Strauss
Journal:  Plant Cell Rep       Date:  2006-02-23       Impact factor: 4.570

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  27 in total

1.  Dissection of the transcriptional program regulating secondary wall biosynthesis during wood formation in poplar.

Authors:  Ruiqin Zhong; Ryan L McCarthy; Chanhui Lee; Zheng-Hua Ye
Journal:  Plant Physiol       Date:  2011-09-09       Impact factor: 8.340

2.  A role for OVATE FAMILY PROTEIN1 (OFP1) and OFP4 in a BLH6-KNAT7 multi-protein complex regulating secondary cell wall formation in Arabidopsis thaliana.

Authors:  Yuanyuan Liu; Carl J Douglas
Journal:  Plant Signal Behav       Date:  2015

3.  SSGA and MSGA: two seed-growing algorithms for constructing collaborative subnetworks.

Authors:  Xiaohui Ji; Su Chen; Jun Cheng Li; Wenping Deng; Zhigang Wei; Hairong Wei
Journal:  Sci Rep       Date:  2017-05-03       Impact factor: 4.379

4.  TF-Cluster: a pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM).

Authors:  Jeff Nie; Ron Stewart; Hang Zhang; James A Thomson; Fang Ruan; Xiaoqi Cui; Hairong Wei
Journal:  BMC Syst Biol       Date:  2011-04-15

5.  SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus.

Authors:  Steven G Hussey; Eshchar Mizrachi; Antanas V Spokevicius; Gerd Bossinger; Dave K Berger; Alexander A Myburg
Journal:  BMC Plant Biol       Date:  2011-12-01       Impact factor: 4.215

6.  Characterization of barley (Hordeum vulgare L.) NAC transcription factors suggests conserved functions compared to both monocots and dicots.

Authors:  Michael W Christiansen; Preben B Holm; Per L Gregersen
Journal:  BMC Res Notes       Date:  2011-08-19

Review 7.  NAC-MYB-based transcriptional regulation of secondary cell wall biosynthesis in land plants.

Authors:  Yoshimi Nakano; Masatoshi Yamaguchi; Hitoshi Endo; Nur Ardiyana Rejab; Misato Ohtani
Journal:  Front Plant Sci       Date:  2015-05-05       Impact factor: 5.753

Review 8.  Navigating the transcriptional roadmap regulating plant secondary cell wall deposition.

Authors:  Steven G Hussey; Eshchar Mizrachi; Nicky M Creux; Alexander A Myburg
Journal:  Front Plant Sci       Date:  2013-08-29       Impact factor: 5.753

Review 9.  Integrated -omics: a powerful approach to understanding the heterogeneous lignification of fibre crops.

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Journal:  Int J Mol Sci       Date:  2013-05-24       Impact factor: 5.923

10.  Identification of predominant genes involved in regulation and execution of senescence-associated nitrogen remobilization in flag leaves of field grown barley.

Authors:  Julien Hollmann; Per L Gregersen; Karin Krupinska
Journal:  J Exp Bot       Date:  2014-04-03       Impact factor: 6.992

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