Literature DB >> 20453916

Interpretation of biomolecular NMR spin relaxation parameters.

Tyler Reddy1, Jan K Rainey.   

Abstract

Biomolecular nuclear magnetic resonance (NMR) spin relaxation experiments provide exquisite information on the picosecond to nanosecond timescale motions of bond vectors. Spin-lattice (T1) and spin-spin (T2) relaxation times and the steady-state nuclear Overhauser effect (NOE) are the first set of parameters extracted from typical 15N or 13C NMR relaxation experiments. Therefore, verifying that T1, T2, and NOE are consistent with theoretical predictions is an important step before carrying out the more detailed model-free and reduced spectral density mapping analyses commonly employed. In this mini-review, we discuss the essential motional parameters used to describe biomolecular dynamics in the context of a variety of examples of folded and intrinsically disordered proteins and peptides in aqueous and membrane mimetic environments. Estimates of these parameters can be used as input for an online interface, introduced herein, allowing plotting of trends of T1, T2, and NOE with magnetic field strength. The plots may serve as a first-check to the spectroscopist preparing to embark on a detailed NMR relaxation analysis.

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Year:  2010        PMID: 20453916     DOI: 10.1139/o09-152

Source DB:  PubMed          Journal:  Biochem Cell Biol        ISSN: 0829-8211            Impact factor:   3.626


  7 in total

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2.  Preserved Transmembrane Segment Topology, Structure, and Dynamics in Disparate Micellar Environments.

Authors:  David N Langelaan; Aditya Pandey; Muzaddid Sarker; Jan K Rainey
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Authors:  Megan Bergkessel; Brett M Babin; David VanderVelde; Michael J Sweredoski; Annie Moradian; Roxana Eggleston-Rangel; Sonja Hess; David A Tirrell; Irina Artsimovitch; Dianne K Newman
Journal:  Mol Microbiol       Date:  2019-07-10       Impact factor: 3.501

6.  Fast evaluation of protein dynamics from deficient 15N relaxation data.

Authors:  Łukasz Jaremko; Mariusz Jaremko; Andrzej Ejchart; Michał Nowakowski
Journal:  J Biomol NMR       Date:  2018-03-28       Impact factor: 2.835

7.  Dynamic 15N{1H} NOE measurements: a tool for studying protein dynamics.

Authors:  Vladlena Kharchenko; Michal Nowakowski; Mariusz Jaremko; Andrzej Ejchart; Łukasz Jaremko
Journal:  J Biomol NMR       Date:  2020-09-12       Impact factor: 2.835

  7 in total

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