Literature DB >> 20453098

Complete genome sequences of Yersinia pestis from natural foci in China.

Xiaona Shen1, Qi Wang, Lianxu Xia, Xiaoyu Zhu, Zhikai Zhang, Ying Liang, Hong Cai, Enmin Zhang, Jianchun Wei, Chen Chen, Zhizhong Song, Hongtao Zhang, Dongzheng Yu, Rong Hai.   

Abstract

Yersinia pestis, the causative agent of plague, is a deadly bacterium that affects humans. Strain D106004 was isolated from a new plague focus in Yulong County, China, in 2006. To gain insights into the epidemic origin, we have sequenced the genomes of D106004 and strains Z176003 and D182038, isolated from neighboring regions.

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Year:  2010        PMID： 20453098      PMCID： PMC2897648          DOI： 10.1128/JB.00340-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

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Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

2.  Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis.

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

3.  Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea.

Authors:  Patrick Chain; Jane Lamerdin; Frank Larimer; Warren Regala; Victoria Lao; Miriam Land; Loren Hauser; Alan Hooper; Martin Klotz; Jeanette Norton; Luis Sayavedra-Soto; Dave Arciero; Norman Hommes; Mark Whittaker; Daniel Arp
Journal:  J Bacteriol       Date:  2003-05       Impact factor: 3.490

4.  Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen.

Authors:  Patrick S G Chain; Ping Hu; Stephanie A Malfatti; Lyndsay Radnedge; Frank Larimer; Lisa M Vergez; Patricia Worsham; May C Chu; Gary L Andersen
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

5.  Genome sequence of Yersinia pestis, the causative agent of plague.

Authors:  J Parkhill; B W Wren; N R Thomson; R W Titball; M T Holden; M B Prentice; M Sebaihia; K D James; C Churcher; K L Mungall; S Baker; D Basham; S D Bentley; K Brooks; A M Cerdeño-Tárraga; T Chillingworth; A Cronin; R M Davies; P Davis; G Dougan; T Feltwell; N Hamlin; S Holroyd; K Jagels; A V Karlyshev; S Leather; S Moule; P C Oyston; M Quail; K Rutherford; M Simmonds; J Skelton; K Stevens; S Whitehead; B G Barrell
Journal:  Nature       Date:  2001-10-04       Impact factor: 49.962

6.  Microbial gene identification using interpolated Markov models.

Authors:  S L Salzberg; A L Delcher; S Kasif; O White
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

7.  Genome sequence of Yersinia pestis KIM.

Authors:  Wen Deng; Valerie Burland; Guy Plunkett; Adam Boutin; George F Mayhew; Paul Liss; Nicole T Perna; Debra J Rose; Bob Mau; Shiguo Zhou; David C Schwartz; Jaqueline D Fetherston; Luther E Lindler; Robert R Brubaker; Gregory V Plano; Susan C Straley; Kathleen A McDonough; Matthew L Nilles; Jyl S Matson; Frederick R Blattner; Robert D Perry
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

8.  Spatial variation of Yersinia pestis from Yunnan Province of China.

Authors:  Zhikai Zhang; Rong Hai; Zhizhong Song; Lianxu Xia; Yun Liang; Hong Cai; Ying Liang; Xiaona Shen; Enmin Zhang; Jianguo Xu; Dongzheng Yu; Xue-Jie Yu
Journal:  Am J Trop Med Hyg       Date:  2009-10       Impact factor: 2.345

9.  A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis.

Authors:  Jeffrey W Touchman; David M Wagner; Jicheng Hao; Stephen D Mastrian; Maulik K Shah; Amy J Vogler; Christopher J Allender; Erin A Clark; Debbie S Benitez; David J Youngkin; Jessica M Girard; Raymond K Auerbach; Stephen M Beckstrom-Sternberg; Paul Keim
Journal:  PLoS One       Date:  2007-02-21       Impact factor: 3.240

10.  Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America.

Authors:  Raymond K Auerbach; Apichai Tuanyok; William S Probert; Leo Kenefic; Amy J Vogler; David C Bruce; Christine Munk; Thomas S Brettin; Mark Eppinger; Jacques Ravel; David M Wagner; Paul Keim
Journal:  PLoS One       Date:  2007-08-22       Impact factor: 3.240
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  9 in total

1.  Chromosomal rearrangement features of Yersinia pestis strains from natural plague foci in China.

Authors:  Ying Liang; Fang Xie; Xinyuan Tang; Mei Wang; Enmin Zhang; Zhikai Zhang; Hong Cai; Yanhua Wang; Xiaona Shen; Hongqun Zhao; Dongzheng Yu; Lianxu Xia; Rong Hai
Journal:  Am J Trop Med Hyg       Date:  2014-08-11       Impact factor: 2.345

Review 2.  Yersinia pestis: the Natural History of Plague.

Authors:  R Barbieri; M Signoli; D Chevé; C Costedoat; S Tzortzis; G Aboudharam; D Raoult; M Drancourt
Journal:  Clin Microbiol Rev       Date:  2020-12-09       Impact factor: 26.132

3.  Delineation and analysis of chromosomal regions specifying Yersinia pestis.

Authors:  Anne Derbise; Viviane Chenal-Francisque; Christèle Huon; Corinne Fayolle; Christian E Demeure; Béatrice Chane-Woon-Ming; Claudine Médigue; B Joseph Hinnebusch; Elisabeth Carniel
Journal:  Infect Immun       Date:  2010-07-06       Impact factor: 3.441

4.  Solving the Problem: Genome Annotation Standards before the Data Deluge.

Authors:  William Klimke; Claire O'Donovan; Owen White; J Rodney Brister; Karen Clark; Boris Fedorov; Ilene Mizrachi; Kim D Pruitt; Tatiana Tatusova
Journal:  Stand Genomic Sci       Date:  2011-10-01

5.  Human plague associated with Tibetan sheep originates in marmots.

Authors:  Ruixia Dai; Baiqing Wei; Haoming Xiong; Xiaoyan Yang; Yao Peng; Jian He; Juan Jin; Yumeng Wang; Xi Zha; Zhikai Zhang; Ying Liang; Qingwen Zhang; Jianguo Xu; Zuyun Wang; Wei Li
Journal:  PLoS Negl Trop Dis       Date:  2018-08-16

6.  Soil salinity and aridity specify plague foci in the United States of America.

Authors:  Rémi Barbieri; Gaëtan Texier; Catherine Keller; Michel Drancourt
Journal:  Sci Rep       Date:  2020-04-10       Impact factor: 4.379

Review 7.  Ancient pathogen genomics as an emerging tool for infectious disease research.

Authors:  Maria A Spyrou; Kirsten I Bos; Alexander Herbig; Johannes Krause
Journal:  Nat Rev Genet       Date:  2019-06       Impact factor: 53.242

8.  Thousands of missed genes found in bacterial genomes and their analysis with COMBREX.

Authors:  Derrick E Wood; Henry Lin; Ami Levy-Moonshine; Rajiswari Swaminathan; Yi-Chien Chang; Brian P Anton; Lais Osmani; Martin Steffen; Simon Kasif; Steven L Salzberg
Journal:  Biol Direct       Date:  2012-10-30       Impact factor: 4.540

9.  Ten years of surveillance of the Yulong plague focus in China and the molecular typing and source tracing of the isolates.

Authors:  Peng Wang; Liyuan Shi; Fuxin Zhang; Ying Guo; Zhikai Zhang; Hongli Tan; Zhigang Cui; Yibo Ding; Ying Liang; Yun Liang; Dongzheng Yu; Jianguo Xu; Wei Li; Zhizhong Song
Journal:  PLoS Negl Trop Dis       Date:  2018-03-30
  9 in total

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