Literature DB >> 20451442

A novel computational method for comparing vibrational circular dichroism spectra.

Jian Shen1, Chengyue Zhu, Stephan Reiling, Roy Vaz.   

Abstract

A novel method, SimIR/VCD, for comparing experimental and calculated VCD (vibrational circular dichroism) spectra is developed, based on newly defined spectra similarities. With computationally optimized frequency scaling and shifting, a calculated spectrum can be easily identified to match an observed spectrum, which leads to an unbiased molecular chirality assignment. The time-consuming manual band-fitting work is greatly reduced. With (1S)-(-)-alpha-pinene as an example, it demonstrates that the calculated VCD similarity is correlated with VCD spectra matching quality and has enough sensitivity to identify variations in the spectra. The study also compares spectra calculated using different DFT methods and basis sets. Using this method should facilitate the spectra matching, reduce human error and provide a confidence measure in the chiral assignment using VCD spectroscopy. Copyright 2010 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20451442     DOI: 10.1016/j.saa.2010.04.014

Source DB:  PubMed          Journal:  Spectrochim Acta A Mol Biomol Spectrosc        ISSN: 1386-1425            Impact factor:   4.098


  7 in total

1.  Photoexcitation of flavoenzymes enables a stereoselective radical cyclization.

Authors:  Kyle F Biegasiewicz; Simon J Cooper; Xin Gao; Daniel G Oblinsky; Ji Hye Kim; Samuel E Garfinkle; Leo A Joyce; Braddock A Sandoval; Gregory D Scholes; Todd K Hyster
Journal:  Science       Date:  2019-06-21       Impact factor: 47.728

2.  Enantiomeric characterization and structure elucidation of Otamixaban.

Authors:  Jian Shen; Jiping Yang; Winfried Heyse; Harald Schweitzer; Norbert Nagel; Doris Andert; Chengyue Zhu; Vincent Morrison; Gregory A Nemeth; Teng-Man Chen; Zhicheng Zhao; Timothy A Ayers; Yong-Mi Choi
Journal:  J Pharm Anal       Date:  2013-11-26

3.  Beyond optical rotation: what's left is not always right in total synthesis.

Authors:  Leo A Joyce; Christopher C Nawrat; Edward C Sherer; Mirlinda Biba; Andrew Brunskill; Gary E Martin; Ryan D Cohen; Ian W Davies
Journal:  Chem Sci       Date:  2017-10-30       Impact factor: 9.825

4.  Taming conformational heterogeneity in and with vibrational circular dichroism spectroscopy.

Authors:  Mark A J Koenis; Yiyin Xia; Sérgio R Domingos; Lucas Visscher; Wybren Jan Buma; Valentin P Nicu
Journal:  Chem Sci       Date:  2019-07-09       Impact factor: 9.825

5.  CF3: an overlooked chromophore in VCD spectra. A review of recent applications in structural determination.

Authors:  Sergio Abbate; Giovanna Longhi; Giuseppe Mazzeo; Claudio Villani; Silvija Petković; Renzo Ruzziconi
Journal:  RSC Adv       Date:  2019-04-16       Impact factor: 3.361

Review 6.  Enantiomeric Mixtures in Natural Product Chemistry: Separation and Absolute Configuration Assignment.

Authors:  Andrea N L Batista; Fernando M Dos Santos; João M Batista; Quezia B Cass
Journal:  Molecules       Date:  2018-02-23       Impact factor: 4.411

7.  The Assignment of the Absolute Configuration of Non-Cyclic Sesquiterpenes by Vibrational and Electronic Circular Dichroism: The Example of Chiliadenus lopadusanus Metabolites.

Authors:  Giuseppe Mazzeo; Alessio Cimmino; Giovanna Longhi; Marco Masi; Antonio Evidente; Sergio Abbate
Journal:  Biomolecules       Date:  2021-12-18
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.