Literature DB >> 20450487

Prediction of cyclin proteins using Chou's pseudo amino acid composition.

Hassan Mohabatkar1.   

Abstract

There are different types of cyclins, which are active during the cell cycle and enable cyclin-dependent kinases to phosphorylate different substrates. Since there is not much similarity between amino acid sequences of cyclins, predicting these proteins is an important job. This paper presents a bioinformatics classifier to predict cyclins based on Chou's pseudo amino acid composition. Analysis of the results by StAR, which is a program for the analysis of ROC curves, showed that accuracy of the approach was 83.53% (AUC=89.44%). The present work demonstrates that the method can provide useful information for predicting cyclins.

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Year:  2010        PMID: 20450487     DOI: 10.2174/092986610792231564

Source DB:  PubMed          Journal:  Protein Pept Lett        ISSN: 0929-8665            Impact factor:   1.890


  46 in total

1.  SySAP: a system-level predictor of deleterious single amino acid polymorphisms.

Authors:  Tao Huang; Chuan Wang; Guoqing Zhang; Lu Xie; Yixue Li
Journal:  Protein Cell       Date:  2011-12-19       Impact factor: 14.870

2.  Predicting the Functional Types of Singleplex and Multiplex Eukaryotic Membrane Proteins via Different Models of Chou's Pseudo Amino Acid Compositions.

Authors:  Hong-Liang Zou; Xuan Xiao
Journal:  J Membr Biol       Date:  2015-10-12       Impact factor: 1.843

3.  iRSpot-GAEnsC: identifing recombination spots via ensemble classifier and extending the concept of Chou's PseAAC to formulate DNA samples.

Authors:  Muhammad Kabir; Maqsood Hayat
Journal:  Mol Genet Genomics       Date:  2015-08-30       Impact factor: 3.291

4.  In vitro transcriptomic prediction of hepatotoxicity for early drug discovery.

Authors:  Feng Cheng; Dan Theodorescu; Ira G Schulman; Jae K Lee
Journal:  J Theor Biol       Date:  2011-08-27       Impact factor: 2.691

5.  EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC.

Authors:  Tzu-Hao Chang; Li-Ching Wu; Tzong-Yi Lee; Shu-Pin Chen; Hsien-Da Huang; Jorng-Tzong Horng
Journal:  J Comput Aided Mol Des       Date:  2013-01-03       Impact factor: 3.686

6.  Sequence-specific flexibility organization of splicing flanking sequence and prediction of splice sites in the human genome.

Authors:  Yongchun Zuo; Pengfei Zhang; Li Liu; Tao Li; Yong Peng; Guangpeng Li; Qianzhong Li
Journal:  Chromosome Res       Date:  2014-04-12       Impact factor: 5.239

7.  Protein remote homology detection by combining Chou's distance-pair pseudo amino acid composition and principal component analysis.

Authors:  Bin Liu; Junjie Chen; Xiaolong Wang
Journal:  Mol Genet Genomics       Date:  2015-04-21       Impact factor: 3.291

Review 8.  Some illuminating remarks on molecular genetics and genomics as well as drug development.

Authors:  Kuo-Chen Chou
Journal:  Mol Genet Genomics       Date:  2020-01-01       Impact factor: 3.291

9.  A multilabel model based on Chou's pseudo-amino acid composition for identifying membrane proteins with both single and multiple functional types.

Authors:  Chao Huang; Jing-Qi Yuan
Journal:  J Membr Biol       Date:  2013-04-02       Impact factor: 1.843

10.  Comprehensive comparative analysis and identification of RNA-binding protein domains: multi-class classification and feature selection.

Authors:  Samad Jahandideh; Vinodh Srinivasasainagendra; Degui Zhi
Journal:  J Theor Biol       Date:  2012-08-03       Impact factor: 2.691

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