Literature DB >> 20449283

Molecular crowding of the cosolutes induces an intramolecular i-motif structure of triplet repeat DNA oligomers at neutral pH.

Arivazhagan Rajendran1, Shu-ichi Nakano, Naoki Sugimoto.   

Abstract

We now present the first example in which triplet repeat DNAs adopt the i-motif structure at neutral pH by molecular crowding. Crowding stabilized the i-motif and the pK(a) of N3 of cytosine was raised in such a microenvironment. Molecular crowding is known to accelerate the formation of the multi-stranded i-motif while the triplet repeats adopt the single-strand structure.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20449283     DOI: 10.1039/b922050j

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  39 in total

1.  Upregulation of BCL-2 by acridone derivative through gene promoter i-motif for alleviating liver damage of NAFLD/NASH.

Authors:  Xiaoya Li; Jing Wang; Xue Gong; Meiling Zhang; Shuangshuang Kang; Bing Shu; Zuzhuang Wei; Zhi-Shu Huang; Ding Li
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

2.  Charged nucleobases and their potential for RNA catalysis.

Authors:  Jennifer L Wilcox; Amarpreet K Ahluwalia; Philip C Bevilacqua
Journal:  Acc Chem Res       Date:  2011-07-06       Impact factor: 22.384

3.  Ion-mediated RNA structural collapse: effect of spatial confinement.

Authors:  Zhi-Jie Tan; Shi-Jie Chen
Journal:  Biophys J       Date:  2012-08-22       Impact factor: 4.033

4.  Folding and hydrodynamics of a DNA i-motif from the c-MYC promoter determined by fluorescent cytidine analogs.

Authors:  Samantha M Reilly; Daniel F Lyons; Sara E Wingate; Robert T Wright; John J Correia; David M Jameson; Randy M Wadkins
Journal:  Biophys J       Date:  2014-10-07       Impact factor: 4.033

5.  Topological impact of noncanonical DNA structures on Klenow fragment of DNA polymerase.

Authors:  Shuntaro Takahashi; John A Brazier; Naoki Sugimoto
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-21       Impact factor: 11.205

6.  Unusual Isothermal Hysteresis in DNA i-Motif pH Transitions: A Study of the RAD17 Promoter Sequence.

Authors:  R Aaron Rogers; Aaron M Fleming; Cynthia J Burrows
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

7.  Study of conformational transitions of i-motif DNA using time-resolved fluorescence and multivariate analysis methods.

Authors:  Sanae Benabou; Cyril Ruckebusch; Michel Sliwa; Anna Aviñó; Ramon Eritja; Raimundo Gargallo; Anna de Juan
Journal:  Nucleic Acids Res       Date:  2019-07-26       Impact factor: 16.971

8.  Probing the Potential Role of Non-B DNA Structures at Yeast Meiosis-Specific DNA Double-Strand Breaks.

Authors:  Rucha Kshirsagar; Krishnendu Khan; Mamata V Joshi; Ramakrishna V Hosur; K Muniyappa
Journal:  Biophys J       Date:  2017-05-23       Impact factor: 4.033

9.  Single-molecule analysis of i-motif within self-assembled DNA duplexes and nanocircles.

Authors:  Anoja Megalathan; Bobby D Cox; Peter D Wilkerson; Anisa Kaur; Kumar Sapkota; Joseph E Reiner; Soma Dhakal
Journal:  Nucleic Acids Res       Date:  2019-08-22       Impact factor: 16.971

10.  Effect of interior loop length on the thermal stability and pK(a) of i-motif DNA.

Authors:  Samantha M Reilly; Rhianna K Morgan; Tracy A Brooks; Randy M Wadkins
Journal:  Biochemistry       Date:  2015-02-03       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.