Literature DB >> 20445247

Crystallization and preliminary crystallographic studies of a flavin-dependent thymidylate synthase from Helicobacter pylori.

Xiaoli Zhang1, Jinyong Zhang, Xuhu Mao, Quanming Zou, Yonglin Hu, Da Cheng Wang.   

Abstract

The ThyX enzymes that have recently been identified in various bacteria, including some important human pathogens such as Helicobacter pylori and Mycobacterium tuberculosis, are flavin-dependent thymidylate synthases that function in the place of classic thymidylate synthase enzymes in the biosynthesis of dTMP, which is one of the building blocks of DNA. They are promising targets for the development of novel antibiotics because they utilize catalytic mechanisms that are distinct from those of the classic thymidylate synthases found in most organisms, including humans. In this study, H. pylori ThyX was purified and crystallized in complex with flavin adenine dinucleotide (FAD) and a diffraction data set was collected to 2.5 A resolution. The crystals belonged to space group C2, with unit-cell parameters a = 221.92, b = 49.43, c = 143.02 A, beta = 98.84 degrees .

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Year:  2010        PMID: 20445247      PMCID: PMC2864680          DOI: 10.1107/S174430911000864X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  9 in total

1.  An alternative flavin-dependent mechanism for thymidylate synthesis.

Authors:  Hannu Myllykallio; Gerard Lipowski; Damien Leduc; Jonathan Filee; Patrick Forterre; Ursula Liebl
Journal:  Science       Date:  2002-05-23       Impact factor: 47.728

2.  Functional analysis of substrate and cofactor complex structures of a thymidylate synthase-complementing protein.

Authors:  Irimpan I Mathews; Ashley M Deacon; Jaume M Canaves; Daniel McMullan; Scott A Lesley; Sanjay Agarwalla; Peter Kuhn
Journal:  Structure       Date:  2003-06       Impact factor: 5.006

3.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

4.  Catalytic mechanism and structure of viral flavin-dependent thymidylate synthase ThyX.

Authors:  Sébastien Graziani; Julie Bernauer; Stéphane Skouloubris; Marc Graille; Cong-Zhao Zhou; Christophe Marchand; Paulette Decottignies; Herman van Tilbeurgh; Hannu Myllykallio; Ursula Liebl
Journal:  J Biol Chem       Date:  2006-05-17       Impact factor: 5.157

5.  An unusual mechanism of thymidylate biosynthesis in organisms containing the thyX gene.

Authors:  Eric M Koehn; Todd Fleischmann; John A Conrad; Bruce A Palfey; Scott A Lesley; Irimpan I Mathews; Amnon Kohen
Journal:  Nature       Date:  2009-04-16       Impact factor: 49.962

Review 6.  The catalytic mechanism and structure of thymidylate synthase.

Authors:  C W Carreras; D V Santi
Journal:  Annu Rev Biochem       Date:  1995       Impact factor: 23.643

7.  Mechanistic studies of a flavin-dependent thymidylate synthase.

Authors:  Nitish Agrawal; Scott A Lesley; Peter Kuhn; Amnon Kohen
Journal:  Biochemistry       Date:  2004-08-17       Impact factor: 3.162

Review 8.  Two distinct pathways for thymidylate (dTMP) synthesis in (hyper)thermophilic Bacteria and Archaea.

Authors:  D Leduc; S Graziani; L Meslet-Cladiere; A Sodolescu; U Liebl; H Myllykallio
Journal:  Biochem Soc Trans       Date:  2004-04       Impact factor: 5.407

Review 9.  The integration of macromolecular diffraction data.

Authors:  Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
  9 in total
  1 in total

1.  Targeting of Helicobacter pylori thymidylate synthase ThyX by non-mitotoxic hydroxy-naphthoquinones.

Authors:  Stéphane Skouloubris; Kamel Djaout; Isabelle Lamarre; Jean-Christophe Lambry; Karine Anger; Julien Briffotaux; Ursula Liebl; Hilde de Reuse; Hannu Myllykallio
Journal:  Open Biol       Date:  2015-06       Impact factor: 6.411

  1 in total

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