Literature DB >> 20445244

Crystallization and preliminary X-ray studies of azoreductases from Bacillus sp. B29.

Daiki Ogata1, Toshihiko Ooi, Takaaki Fujiwara, Seiichi Taguchi, Isao Tanaka, Min Yao.   

Abstract

Azoreductases from Bacillus sp. B29 are NADH-dependent flavoenzymes which contain a flavin mononucleotide (FMN) as a prosthetic group and exist as homodimers composed of 23 kDa subunits. These enzymes catalyze the reductive degradation of various azo compounds by a ping-pong mechanism. In order to determine the structure-function relationship of the azo-dye reduction mechanism, an X-ray crystallographic study of azoreductases was performed. Selenomethionine-labelled AzrA (SeMet-AzrA) and AzrC were crystallized by the hanging-drop vapour-diffusion method. A crystal of SeMet-AzrA diffracted to 2.0 A resolution and was determined to belong to space group P2(1)2(1)2(1), with unit-cell parameters a = 56.9, b = 69.0, c = 105.4 A. The native crystals of AzrC belonged to space group C2, with unit-cell parameters a = 192.0, b = 56.6, c = 105.5 A, beta = 115.7 degrees , and diffracted to 2.21 A resolution.

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Year:  2010        PMID: 20445244      PMCID: PMC2864677          DOI: 10.1107/S1744309110007785

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

1.  Three-dimensional structure of AzoR from Escherichia coli. An oxidereductase conserved in microorganisms.

Authors:  Kosuke Ito; Masayuki Nakanishi; Woo-Cheol Lee; Hiroshi Sasaki; Shuhei Zenno; Kaoru Saigo; Yukio Kitade; Masaru Tanokura
Journal:  J Biol Chem       Date:  2006-05-09       Impact factor: 5.157

2.  The reductive cleavage of 4-dimethylaminoazobenzene by rat liver; the intracellular distribution of the enzyme system and its requirement for triphosphopyridine nucleotide.

Authors:  G C MUELLER; J A MILLER
Journal:  J Biol Chem       Date:  1949-10       Impact factor: 5.157

3.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  Characterization of thermostable FMN-dependent NADH azoreductase from the moderate thermophile Geobacillus stearothermophilus.

Authors:  Ken'ichiro Matsumoto; Yuichi Mukai; Daiki Ogata; Fumi Shozui; John Masani Nduko; Seiichi Taguchi; Toshihiko Ooi
Journal:  Appl Microbiol Biotechnol       Date:  2009-12-09       Impact factor: 4.813

Review 5.  Recent advances in azo dye degrading enzyme research.

Authors:  Huizhong Chen
Journal:  Curr Protein Pept Sci       Date:  2006-04       Impact factor: 3.272

Review 6.  Mutagenicity of azo dyes: structure-activity relationships.

Authors:  K T Chung; C E Cerniglia
Journal:  Mutat Res       Date:  1992-09       Impact factor: 2.433

7.  Comparative enzymatic analysis of azoreductases from Bacillus sp. B29.

Authors:  Toshihiko Ooi; Takeshi Shibata; Ken'ichiro Matsumoto; Shinichi Kinoshita; Seiichi Taguchi
Journal:  Biosci Biotechnol Biochem       Date:  2009-05-07       Impact factor: 2.043

8.  Structure of mannosyl-3-phosphoglycerate phosphatase from Pyrococcus horikoshii.

Authors:  Takashi Kawamura; Nobuhisa Watanabe; Isao Tanaka
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-11-18

9.  Crystal structure of an aerobic FMN-dependent azoreductase (AzoA) from Enterococcus faecalis.

Authors:  Zhi-Jie Liu; Huizhong Chen; Neil Shaw; Sherryll L Hopper; Lirong Chen; Siwei Chen; Carl E Cerniglia; Bi-Cheng Wang
Journal:  Arch Biochem Biophys       Date:  2007-03-30       Impact factor: 4.013

10.  An azoreductase, aerobic NADH-dependent flavoprotein discovered from Bacillus sp.: functional expression and enzymatic characterization.

Authors:  Toshihiko Ooi; Takeshi Shibata; Reiko Sato; Hiroaki Ohno; Shinichi Kinoshita; Tran Linh Thuoc; Seiichi Taguchi
Journal:  Appl Microbiol Biotechnol       Date:  2007-02-15       Impact factor: 4.813

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