Literature DB >> 20444518

Genome mapping in intensively studied wild vertebrate populations.

Jon Slate1, Anna W Santure, Philine G D Feulner, Emily A Brown, Alex D Ball, Susan E Johnston, Jake Gratten.   

Abstract

Over the past decade, long-term studies of vertebrate populations have been the focus of many quantitative genetic studies. As a result, we have a clearer understanding of why some fitness-related traits are heritable and under selection, but are apparently not evolving. An exciting extension of this work is to identify the genes underlying phenotypic variation in natural populations. The advent of next-generation sequencing and high-throughput single nucleotide polymorphism (SNP) genotyping platforms means that mapping studies are set to become widespread in those wild populations for whom appropriate phenotypic data and DNA samples are available. Here, we highlight the progress made in this area and define evolutionary genetic questions that have become tractable with the arrival of these new genomics technologies. Copyright 2010 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2010        PMID: 20444518     DOI: 10.1016/j.tig.2010.03.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  28 in total

1.  Genetic linkage map of a wild genome: genomic structure, recombination and sexual dimorphism in bighorn sheep.

Authors:  Jocelyn Poissant; John T Hogg; Corey S Davis; Joshua M Miller; Jillian F Maddox; David W Coltman
Journal:  BMC Genomics       Date:  2010-09-28       Impact factor: 3.969

2.  A genome-wide scan study identifies a single nucleotide substitution in ASIP associated with white versus non-white coat-colour variation in sheep (Ovis aries).

Authors:  M-H Li; T Tiirikka; J Kantanen
Journal:  Heredity (Edinb)       Date:  2013-09-11       Impact factor: 3.821

3.  Life history trade-offs at a single locus maintain sexually selected genetic variation.

Authors:  Susan E Johnston; Jacob Gratten; Camillo Berenos; Jill G Pilkington; Tim H Clutton-Brock; Josephine M Pemberton; Jon Slate
Journal:  Nature       Date:  2013-08-21       Impact factor: 49.962

4.  Maximum-likelihood estimation of recent shared ancestry (ERSA).

Authors:  Chad D Huff; David J Witherspoon; Tatum S Simonson; Jinchuan Xing; W Scott Watkins; Yuhua Zhang; Therese M Tuohy; Deborah W Neklason; Randall W Burt; Stephen L Guthery; Scott R Woodward; Lynn B Jorde
Journal:  Genome Res       Date:  2011-02-08       Impact factor: 9.043

5.  QTL mapping for sexually dimorphic fitness-related traits in wild bighorn sheep.

Authors:  J Poissant; C S Davis; R M Malenfant; J T Hogg; D W Coltman
Journal:  Heredity (Edinb)       Date:  2011-08-17       Impact factor: 3.821

6.  Insights into the genetic architecture of morphological traits in two passerine bird species.

Authors:  C N S Silva; S E McFarlane; I J Hagen; L Rönnegård; A M Billing; T Kvalnes; P Kemppainen; B Rønning; T H Ringsby; B-E Sæther; A Qvarnström; H Ellegren; H Jensen; A Husby
Journal:  Heredity (Edinb)       Date:  2017-06-14       Impact factor: 3.821

7.  Disentangling prenatal and postnatal maternal genetic effects reveals persistent prenatal effects on offspring growth in mice.

Authors:  Jason B Wolf; Larry J Leamy; Charles C Roseman; James M Cheverud
Journal:  Genetics       Date:  2011-09-02       Impact factor: 4.562

8.  Meiotic maps of sockeye salmon derived from massively parallel DNA sequencing.

Authors:  Meredith V Everett; Michael R Miller; James E Seeb
Journal:  BMC Genomics       Date:  2012-10-03       Impact factor: 3.969

9.  Transcriptome of the dead: characterisation of immune genes and marker development from necropsy samples in a free-ranging marine mammal.

Authors:  Joseph I Hoffman; Michael A S Thorne; Philip N Trathan; Jaume Forcada
Journal:  BMC Genomics       Date:  2013-01-24       Impact factor: 3.969

10.  A quantitative trait locus analysis of personality in wild bighorn sheep.

Authors:  J Poissant; D Réale; Jga Martin; M Festa-Bianchet; Dw Coltman
Journal:  Ecol Evol       Date:  2013-01-18       Impact factor: 2.912

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