Literature DB >> 20443882

Challenges and standards in reporting diagnostic and prognostic biomarker studies.

Francisco Azuaje1, Yvan Devaux, Daniel Wagner.   

Abstract

The discovery of novel biomarkers is a crucial goal in translational biomedical research. A complete and accurate reporting of biomarker studies, including quantitative prediction models, is fundamental to improve research quality and facilitate their potential incorporation into clinical practice. This paper reviews key problems, guidelines, and challenges in reporting biomarker studies, with an emphasis on diagnostic and prognostic applications in cardiovascular research. Recent advances and recommendations for aiding in peer review, research quality assessment, and the reproducibility of findings, such as diagnostic biosignatures, are discussed. An examination of research recently published in the area of cardiovascular biomarkers was implemented. Such a survey, which was based on a sample of papers deposited in PubMed Central, suggests that there is a need to improve the documentation of biomarker studies in terms of information completeness and clarity, as well as the application of more rigorous quantitative evaluation techniques. There is also room for improving practices in reporting data analysis and research limitations. This survey also suggests that, in comparison with other research areas, the cardiovascular biomarker research domain may not be taking advantage of existing standards for reporting diagnostic accuracy. The review concludes with a discussion of the challenges and recommendations.

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Year:  2009        PMID: 20443882      PMCID: PMC5350675          DOI: 10.1111/j.1752-8062.2008.00075.x

Source DB:  PubMed          Journal:  Clin Transl Sci        ISSN: 1752-8054            Impact factor:   4.689


  26 in total

Review 1.  Sifting the evidence-what's wrong with significance tests?

Authors:  J A Sterne; G Davey Smith
Journal:  BMJ       Date:  2001-01-27

Review 2.  Biomarkers and surrogate endpoints: preferred definitions and conceptual framework.

Authors: 
Journal:  Clin Pharmacol Ther       Date:  2001-03       Impact factor: 6.875

Review 3.  The search for new cardiovascular biomarkers.

Authors:  Robert E Gerszten; Thomas J Wang
Journal:  Nature       Date:  2008-02-21       Impact factor: 49.962

4.  Matrix metalloproteinase-9 is a marker of heart failure after acute myocardial infarction.

Authors:  Daniel R Wagner; Charles Delagardelle; Isabelle Ernens; Didier Rouy; Michel Vaillant; Jean Beissel
Journal:  J Card Fail       Date:  2006-02       Impact factor: 5.712

5.  Identification of dilated cardiomyopathy signature genes through gene expression and network data integration.

Authors:  Anyela Camargo; Francisco Azuaje
Journal:  Genomics       Date:  2008-07-01       Impact factor: 5.736

Review 6.  Towards complete and accurate reporting of studies of diagnostic accuracy: the STARD initiative.

Authors:  Patrick M Bossuyt; Johannes B Reitsma; David E Bruns; Constantine A Gatsonis; Paul P Glasziou; Les M Irwig; Jeroen G Lijmer; David Moher; Drummond Rennie; Henrica C W de Vet
Journal:  BMJ       Date:  2003-01-04

7.  Polymorphism in the MHC2TA gene is associated with features of the metabolic syndrome and cardiovascular mortality.

Authors:  Eero Lindholm; Olle Melander; Peter Almgren; Göran Berglund; Carl-David Agardh; Leif Groop; Marju Orho-Melander
Journal:  PLoS One       Date:  2006-12-20       Impact factor: 3.240

Review 8.  An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors.

Authors:  Peyman Jafari; Francisco Azuaje
Journal:  BMC Med Inform Decis Mak       Date:  2006-06-21       Impact factor: 2.796

9.  Decision forest analysis of 61 single nucleotide polymorphisms in a case-control study of esophageal cancer; a novel method.

Authors:  Qian Xie; Luke D Ratnasinghe; Huixiao Hong; Roger Perkins; Ze-Zhong Tang; Nan Hu; Philip R Taylor; Weida Tong
Journal:  BMC Bioinformatics       Date:  2005-07-15       Impact factor: 3.169

10.  Microarray based diagnosis profits from better documentation of gene expression signatures.

Authors:  Dennis Kostka; Rainer Spang
Journal:  PLoS Comput Biol       Date:  2008-02       Impact factor: 4.475

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  3 in total

1.  A systematic review on metabolomics-based diagnostic biomarker discovery and validation in pancreatic cancer.

Authors:  Nguyen Phuoc Long; Sang Jun Yoon; Nguyen Hoang Anh; Tran Diem Nghi; Dong Kyu Lim; Yu Jin Hong; Soon-Sun Hong; Sung Won Kwon
Journal:  Metabolomics       Date:  2018-08-10       Impact factor: 4.290

2.  [Inappropriate test methods in allergy].

Authors:  J Kleine-Tebbe; D A Herold
Journal:  Hautarzt       Date:  2010-11       Impact factor: 0.751

Review 3.  Heat Shock Factor 1 as a Prognostic and Diagnostic Biomarker of Gastric Cancer.

Authors:  Woong Kim; Seok-Jun Kim
Journal:  Biomedicines       Date:  2021-05-21
  3 in total

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