Literature DB >> 20441889

Nuclear magnetic resonance-based screening of thalassemia and quantification of some hematological parameters using chemometric methods.

Mohammad Arjmand1, Mohsen Kompany-Zareh, Mahdi Vasighi, Nastran Parvizzadeh, Zahra Zamani, Fereshteh Nazgooei.   

Abstract

High-resolution (1)H NMR spectroscopy of biofluids is a good representation of metabolic pattern and offers a high potential noninvasive technique for pathological diagnosis. Diagnosis of thalassemia and quantification of some blood parameters can be performed by using (1)H NMR spectra of human blood serum in parallel with chemometric techniques. Spectra of 28 samples were collected from 15 adult male and female thalassemia patients as experimental set and 13 healthy volunteers as control set. Principal component analysis (PCA) as a dimension reduction tool was used for transforming spectra to abstract factors. The abstract factors were introduced to linear discriminant analysis (LDA), which is a common technique for classification, in order to establish adequate model for discrimination of healthy and unhealthy samples. In addition, these abstract factors were used for calibration of some blood parameters using radial basis function neural network (RBFNN) as an artificial intelligence modeling method. Different test sets (left out samples in training algorithm) were used for evaluating the quality and robustness of the built models. PCA abstract factors were employed as input for LDA model and successfully classified all the members of the test sets except one member of third test set. RBFNN also has a good capability for modeling the most of blood parameters according to proposed network parameters optimization procedure. We conclude that (1)H NMR spectroscopy, LDA and RBFNN assisted by PCA provide a powerful method for thalassemia diagnosis and prediction of some blood variants.

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Year:  2010        PMID: 20441889     DOI: 10.1016/j.talanta.2010.02.014

Source DB:  PubMed          Journal:  Talanta        ISSN: 0039-9140            Impact factor:   6.057


  6 in total

1.  A metabolomic study on the effect of intravascular laser blood irradiation on type 2 diabetic patients.

Authors:  N Kazemi Khoo; A Iravani; M Arjmand; F Vahabi; M Lajevardi; S M Akrami; Z Zamani
Journal:  Lasers Med Sci       Date:  2013-01-29       Impact factor: 3.161

2.  β-Thalassemia Patients Revealed a Significant Change of Untargeted Metabolites in Comparison to Healthy Individuals.

Authors:  Syed Ghulam Musharraf; Ayesha Iqbal; Saqib Hussain Ansari; Sadia Parveen; Ishtiaq Ahmad Khan; Amna Jabbar Siddiqui
Journal:  Sci Rep       Date:  2017-02-13       Impact factor: 4.379

3.  Reflection of treatment proficiency of hydroxyurea treated β-thalassemia serum samples through nuclear magnetic resonance based metabonomics.

Authors:  Ayesha Khalid; Amna Jabbar Siddiqui; Saqib Hussain Ansari; Syed Ghulam Musharraf
Journal:  Sci Rep       Date:  2019-02-14       Impact factor: 4.379

4.  Metabolomics changes in a rat model of obstructive jaundice: mapping to metabolism of amino acids, carbohydrates and lipids as well as oxidative stress.

Authors:  Yue Long; Xin Dong; Yawei Yuan; Jinqiang Huang; Jiangang Song; Yumin Sun; Zhijie Lu; Liqun Yang; Weifeng Yu
Journal:  J Clin Biochem Nutr       Date:  2015-06-04       Impact factor: 3.114

Review 5.  Diagnosis support systems for rare diseases: a scoping review.

Authors:  Carole Faviez; Xiaoyi Chen; Nicolas Garcelon; Antoine Neuraz; Bertrand Knebelmann; Rémi Salomon; Stanislas Lyonnet; Sophie Saunier; Anita Burgun
Journal:  Orphanet J Rare Dis       Date:  2020-04-16       Impact factor: 4.123

6.  Machine learning assistive rapid, label-free molecular phenotyping of blood with two-dimensional NMR correlational spectroscopy.

Authors:  Weng Kung Peng; Tian-Tsong Ng; Tze Ping Loh
Journal:  Commun Biol       Date:  2020-09-28
  6 in total

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