Literature DB >> 20441601

Mapping the complexity of transcription control in higher eukaryotes.

Pavel Tomancak1, Uwe Ohler.   

Abstract

Recent genomic analyses suggest the importance of combinatorial regulation by broadly expressed transcription factors rather than expression domains characterized by highly specific factors.

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Year:  2010        PMID： 20441601      PMCID： PMC2884534          DOI： 10.1186/gb-2010-11-4-115

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


  10 in total

1.  Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites.

Authors:  Marcus B Noyes; Ryan G Christensen; Atsuya Wakabayashi; Gary D Stormo; Michael H Brodsky; Scot A Wolfe
Journal:  Cell       Date:  2008-06-27       Impact factor: 41.582

2.  Diversity and complexity in DNA recognition by transcription factors.

Authors:  Gwenael Badis; Michael F Berger; Anthony A Philippakis; Shaheynoor Talukder; Andrew R Gehrke; Savina A Jaeger; Esther T Chan; Genita Metzler; Anastasia Vedenko; Xiaoyu Chen; Hanna Kuznetsov; Chi-Fong Wang; David Coburn; Daniel E Newburger; Quaid Morris; Timothy R Hughes; Martha L Bulyk
Journal:  Science       Date:  2009-05-14       Impact factor: 47.728

3.  The developmental expression dynamics of Drosophila melanogaster transcription factors.

Authors:  Boris Adryan; Sarah A Teichmann
Journal:  Genome Biol       Date:  2010-04-12       Impact factor: 13.583

4.  Transcriptional regulatory code of a eukaryotic genome.

Authors:  Christopher T Harbison; D Benjamin Gordon; Tong Ihn Lee; Nicola J Rinaldi; Kenzie D Macisaac; Timothy W Danford; Nancy M Hannett; Jean-Bosco Tagne; David B Reynolds; Jane Yoo; Ezra G Jennings; Julia Zeitlinger; Dmitry K Pokholok; Manolis Kellis; P Alex Rolfe; Ken T Takusagawa; Eric S Lander; David K Gifford; Ernest Fraenkel; Richard A Young
Journal:  Nature       Date:  2004-09-02       Impact factor: 49.962

5.  An atlas of combinatorial transcriptional regulation in mouse and man.

Authors:  Timothy Ravasi; Harukazu Suzuki; Carlo Vittorio Cannistraci; Shintaro Katayama; Vladimir B Bajic; Kai Tan; Altuna Akalin; Sebastian Schmeier; Mutsumi Kanamori-Katayama; Nicolas Bertin; Piero Carninci; Carsten O Daub; Alistair R R Forrest; Julian Gough; Sean Grimmond; Jung-Hoon Han; Takehiro Hashimoto; Winston Hide; Oliver Hofmann; Atanas Kamburov; Mandeep Kaur; Hideya Kawaji; Atsutaka Kubosaki; Timo Lassmann; Erik van Nimwegen; Cameron Ross MacPherson; Chihiro Ogawa; Aleksandar Radovanovic; Ariel Schwartz; Rohan D Teasdale; Jesper Tegnér; Boris Lenhard; Sarah A Teichmann; Takahiro Arakawa; Noriko Ninomiya; Kayoko Murakami; Michihira Tagami; Shiro Fukuda; Kengo Imamura; Chikatoshi Kai; Ryoko Ishihara; Yayoi Kitazume; Jun Kawai; David A Hume; Trey Ideker; Yoshihide Hayashizaki
Journal:  Cell       Date:  2010-03-05       Impact factor: 41.582

6.  Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis.

Authors:  Sean D Hooper; Stephanie Boué; Roland Krause; Lars J Jensen; Christopher E Mason; Murad Ghanim; Kevin P White; Eileen E M Furlong; Peer Bork
Journal:  Mol Syst Biol       Date:  2007-01-16       Impact factor: 11.429

7.  Unlocking the secrets of the genome.

Authors:  Susan E Celniker; Laura A L Dillon; Mark B Gerstein; Kristin C Gunsalus; Steven Henikoff; Gary H Karpen; Manolis Kellis; Eric C Lai; Jason D Lieb; David M MacAlpine; Gos Micklem; Fabio Piano; Michael Snyder; Lincoln Stein; Kevin P White; Robert H Waterston
Journal:  Nature       Date:  2009-06-18       Impact factor: 49.962

8.  Evolutionary mirages: selection on binding site composition creates the illusion of conserved grammars in Drosophila enhancers.

Authors:  Richard W Lusk; Michael B Eisen
Journal:  PLoS Genet       Date:  2010-01-22       Impact factor: 5.917

9.  FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database.

Authors:  Ulrike Pfreundt; Daniel P James; Susan Tweedie; Derek Wilson; Sarah A Teichmann; Boris Adryan
Journal:  Nucleic Acids Res       Date:  2009-11-01       Impact factor: 16.971

10.  Global analysis of patterns of gene expression during Drosophila embryogenesis.

Authors:  Pavel Tomancak; Benjamin P Berman; Amy Beaton; Richard Weiszmann; Elaine Kwan; Volker Hartenstein; Susan E Celniker; Gerald M Rubin
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583
  10 in total
  2 in total

1.  Cooperativity of stress-responsive transcription factors in core hypoxia-inducible factor binding regions.

Authors:  Diego Villar; Amaya Ortiz-Barahona; Laura Gómez-Maldonado; Nuria Pescador; Fátima Sánchez-Cabo; Hubert Hackl; Benjamin A T Rodriguez; Zlatko Trajanoski; Ana Dopazo; Tim H M Huang; Pearlly S Yan; Luis Del Peso
Journal:  PLoS One       Date:  2012-09-24       Impact factor: 3.240

2.  Modeling Transcriptional Rewiring in Neutrophils Through the Course of Treated Juvenile Idiopathic Arthritis.

Authors:  Zihua Hu; Kaiyu Jiang; Mark Barton Frank; Yanmin Chen; James N Jarvis
Journal:  Sci Rep       Date:  2018-05-17       Impact factor: 4.379
  2 in total

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