Literature DB >> 2043635

Solvent denaturation and stabilization of globular proteins.

D O Alonso1, K A Dill.   

Abstract

Statistical thermodynamic theory has recently been developed to account for the stabilities of globular proteins. Here we extend that work to predict the effects of solvents on protein stability. Folding is assumed to be driven by solvophobic interactions and opposed by conformational entropy. The solvent dependence of the solvophobic interactions is taken from transfer experiments of Nozaki and Tanford on amino acids into aqueous solutions of urea or guanidine hydrochloride (GuHCl). On the basis of the assumption of two pathways involving collapse and formation of a core, the theory predicts that increasing denaturant should lead to a two-state denaturation transition (i.e., there is a stable state along each path separated by a free energy barrier). The denaturation midpoint is predicted to occur at higher concentrations of urea than of GuHCl. At neutral pH, the radius of the solvent-denatured state should be much smaller than for a random-flight chain and increase with either denaturant concentration or number of polar residues in the chain. A question of interest is whether free energies of folding should depend linearly on denaturant, as is often assumed. The free energy is predicted to be linear for urea but to have some small curvature for GuHCl. Predicted slopes and exposed areas of the unfolded states are found to be in generally good agreement with experiments. We also discuss stabilizing solvents and compare thermal with solvent denaturation.

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Year:  1991        PMID: 2043635     DOI: 10.1021/bi00238a023

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  56 in total

1.  Folding of beta-sandwich proteins: three-state transition of a fibronectin type III module.

Authors:  E Cota; J Clarke
Journal:  Protein Sci       Date:  2000-01       Impact factor: 6.725

2.  Single-molecule protein folding: diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2.

Authors:  A A Deniz; T A Laurence; G S Beligere; M Dahan; A B Martin; D S Chemla; P E Dawson; P G Schultz; S Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

3.  The major transition state in folding need not involve the immobilization of side chains.

Authors:  R A Staniforth; J L Dean; Q Zhong; E Zerovnik; A R Clarke; J P Waltho
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

4.  The participation of human serum albumin domains in chemical and thermal unfolding.

Authors:  B Farruggia; F Rodriguez; R Rigatuso; G Fidelio; G Picó
Journal:  J Protein Chem       Date:  2001-01

5.  To fold or expand--a charged question.

Authors:  Jeremy L England; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-03       Impact factor: 11.205

6.  Coarse-grained strategy for modeling protein stability in concentrated solutions. II: phase behavior.

Authors:  Vincent K Shen; Jason K Cheung; Jeffrey R Errington; Thomas M Truskett
Journal:  Biophys J       Date:  2005-12-30       Impact factor: 4.033

7.  Theory for protein folding cooperativity: helix bundles.

Authors:  Kingshuk Ghosh; K A Dill
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

8.  Protein folding, protein collapse, and tanford's transfer model: lessons from single-molecule FRET.

Authors:  Guy Ziv; Gilad Haran
Journal:  J Am Chem Soc       Date:  2009-03-04       Impact factor: 15.419

9.  Staphylococcal nuclease folding intermediate characterized by hydrogen exchange and NMR spectroscopy.

Authors:  M D Jacobs; R O Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-18       Impact factor: 11.205

10.  Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding.

Authors:  Lan Hua; Ruhong Zhou; D Thirumalai; B J Berne
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-28       Impact factor: 11.205

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