Literature DB >> 20435888

Each conserved active site tyr in the three subunits of human isocitrate dehydrogenase has a different function.

Mayura Dange1, Roberta F Colman.   

Abstract

The human NAD-dependent isocitrate dehydrogenase (IDH) is a heterotetrameric mitochondrial enzyme with 2alpha:1beta:1gamma subunit ratio. The three subunits share 40-52% identity in amino acid sequence and each includes a tyrosine in a comparable position: alphaY126, betaY137, and gammaY135. To study the role of the corresponding tyrosines of each of the subunits of human NAD-IDH, the tyrosines were mutated (one subunit at a time) to Ser, Phe, or Glu. Enzymes were expressed with one mutant and two wild-type subunits. The results of characterization of the mutant enzymes suggest that betaY137 is involved in NAD binding and allosteric activation by ADP. The alphaY126 is required for catalytic activity and likely acts as a general acid in the reaction. The gammaY135 is also required for catalytic activity and may be involved in proper folding of the enzyme. The corresponding tyrosines in the three dissimilar subunits of NAD-IDH thus have distinctive functions.

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Year:  2010        PMID: 20435888      PMCID: PMC2898308          DOI: 10.1074/jbc.M110.115386

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  20 in total

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Authors:  Dyonne T Hartong; Mayura Dange; Terri L McGee; Eliot L Berson; Thaddeus P Dryja; Roberta F Colman
Journal:  Nat Genet       Date:  2008-09-21       Impact factor: 38.330

2.  Evidence for the presence of two nonidentical subunits in NAD-dependent isocitrate dehydrogenase of pig heart.

Authors:  N Ramachandran; R F Colman
Journal:  Proc Natl Acad Sci U S A       Date:  1978-01       Impact factor: 11.205

3.  Active site water molecules revealed in the 2.1 A resolution structure of a site-directed mutant of isocitrate dehydrogenase.

Authors:  D B Cherbavaz; M E Lee; R M Stroud; D E Koshland
Journal:  J Mol Biol       Date:  2000-01-21       Impact factor: 5.469

4.  Diphosphopyridine nucleotide dependent isocitrate dehydrogenase from pig heart. Charactgerization of the active substrate and modes of regulation.

Authors:  P F Cohen; R F Colman
Journal:  Biochemistry       Date:  1972-04-11       Impact factor: 3.162

5.  Binding of ligands to half of subunits of NAD-dependent isocitrate dehydrogenase from pig heart. Binding of manganous ion, isocitrate, ADP and NAD.

Authors:  R S Ehrlich; R F Colman
Journal:  J Biol Chem       Date:  1981-02-10       Impact factor: 5.157

6.  Role of alpha-Asp181, beta-Asp192, and gamma-Asp190 in the distinctive subunits of human NAD-specific isocitrate dehydrogenase.

Authors:  Krzysztof P Bzymek; Roberta F Colman
Journal:  Biochemistry       Date:  2007-04-14       Impact factor: 3.162

7.  Critical role of Lys212 and Tyr140 in porcine NADP-dependent isocitrate dehydrogenase.

Authors:  Tae-Kang Kim; Peychii Lee; Roberta F Colman
Journal:  J Biol Chem       Date:  2003-09-25       Impact factor: 5.157

8.  Evaluation by mutagenesis of the importance of 3 arginines in alpha, beta, and gamma subunits of human NAD-dependent isocitrate dehydrogenase.

Authors:  Sambanthamurthy Soundar; Jung-Hoon Park; Tae-Lin Huh; Roberta F Colman
Journal:  J Biol Chem       Date:  2003-10-10       Impact factor: 5.157

9.  Crystal structure of porcine mitochondrial NADP+-dependent isocitrate dehydrogenase complexed with Mn2+ and isocitrate. Insights into the enzyme mechanism.

Authors:  Christopher Ceccarelli; Neil B Grodsky; Nandana Ariyaratne; Roberta F Colman; Brian J Bahnson
Journal:  J Biol Chem       Date:  2002-08-30       Impact factor: 5.157

10.  Chemical characterization of distinct subunits of pig heart DPN-specific isocitrate dehydrogenase.

Authors:  N Ramachandran; R F Colman
Journal:  J Biol Chem       Date:  1980-09-25       Impact factor: 5.157

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  7 in total

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Authors:  Lee McAlister-Henn
Journal:  Arch Biochem Biophys       Date:  2011-10-07       Impact factor: 4.013

2.  Enhanced glutamate uptake into synaptic vesicles fueled by vesicle-generated ATP from phosphoenolpyruvate and ADP. Proposed role of a novel enzyme.

Authors:  Kouji Takeda; Tetsufumi Ueda
Journal:  Neurochem Res       Date:  2012-08-23       Impact factor: 3.996

3.  The Role of Mitochondrial NADPH-Dependent Isocitrate Dehydrogenase in Cancer Cells.

Authors:  Katarína Smolková; Petr Ježek
Journal:  Int J Cell Biol       Date:  2012-05-20

4.  The β and γ subunits play distinct functional roles in the α2βγ heterotetramer of human NAD-dependent isocitrate dehydrogenase.

Authors:  Tengfei Ma; Yingjie Peng; Wei Huang; Yabing Liu; Jianping Ding
Journal:  Sci Rep       Date:  2017-01-31       Impact factor: 4.379

5.  Molecular mechanism of the allosteric regulation of the αγ heterodimer of human NAD-dependent isocitrate dehydrogenase.

Authors:  Tengfei Ma; Yingjie Peng; Wei Huang; Jianping Ding
Journal:  Sci Rep       Date:  2017-01-18       Impact factor: 4.379

6.  Structure and allosteric regulation of human NAD-dependent isocitrate dehydrogenase.

Authors:  Pengkai Sun; Yan Liu; Tengfei Ma; Jianping Ding
Journal:  Cell Discov       Date:  2020-12-22       Impact factor: 10.849

7.  Insights into the inhibitory mechanisms of NADH on the αγ heterodimer of human NAD-dependent isocitrate dehydrogenase.

Authors:  Yabing Liu; Lejia Hu; Tengfei Ma; Jun Yang; Jianping Ding
Journal:  Sci Rep       Date:  2018-02-16       Impact factor: 4.379

  7 in total

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