Literature DB >> 20435067

Genotyping assay for the identification of 2009-2010 pandemic and seasonal H1N1 influenza virus reassortants.

M F Ducatez1, S Sonnberg, R J Hall, M Peacey, J Ralston, R J Webby, Q S Huang.   

Abstract

New Zealand identified its first pandemic H1N1 influenza cases in late April 2009, immediately prior to the historical start of the New Zealand influenza season. Both pandemic and oseltamivir-resistant seasonal H1N1 viruses cocirculated in the population for a period of time. Thus, concerns were raised about the possibility of reassortment events between the two strains. An RT-PCR-based genotyping assay was developed so that H1N1 influenza coinfections and reassortants could be detected quickly. The assay differentiated effectively the seasonal and pandemic strains. It also confirmed the identification of the first reported coinfection of pandemic and seasonal H1N1 strains during the 2009 Southern Hemisphere influenza season in New Zealand. Copyright 2010 Elsevier B.V. All rights reserved.

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Year:  2010        PMID： 20435067      PMCID： PMC2910119          DOI： 10.1016/j.jviromet.2010.04.020

Source DB:  PubMed          Journal:  J Virol Methods        ISSN： 0166-0934            Impact factor:   2.014


  16 in total

1.  Multiple sequence alignment with the Clustal series of programs.

Authors:  Ramu Chenna; Hideaki Sugawara; Tadashi Koike; Rodrigo Lopez; Toby J Gibson; Desmond G Higgins; Julie D Thompson
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Isolation of influenza A/H3 and B viruses from an influenza patient: confirmation of co-infection by two influenza viruses.

Authors:  Shoichi Toda; Reiko Okamoto; Tomoko Nishida; Toshiki Nakao; Masatoshi Yoshikawa; Eitaro Suzuki; Shigenori Miyamura
Journal:  Jpn J Infect Dis       Date:  2006-04       Impact factor: 1.362

3.  Identification and characterization of a late AH1N2 human reassortant in France during the 2002-2003 influenza season.

Authors:  Shaker Al Faress; Olivier Ferraris; Vincent Moules; Martine Valette; Alan Hay; Bruno Lina
Journal:  Virus Res       Date:  2007-12-04       Impact factor: 3.303

4.  [Eleven cases of co-infection with influenza type A and type B suspected by use of a rapid diagnostic kit and confirmed by RT-PCR and virus isolation].

Authors:  Shinichi Takao; Michimaru Hara; Osamu Kakuta; Yukie Shimazu; Masaru Kuwayama; Shinji Fukuda; Kazuo Miyazaki
Journal:  Kansenshogaku Zasshi       Date:  2005-11

5.  Characterization of an influenza A and influenza B co-infection of a patient in a long-term care facility with co-circulating influenza A and influenza B.

Authors:  AliReza Eshaghi; Joanne Blair; Laura Burton; Kam Wing Choi; Cedric De Lima; Carla Duncan; Cyril Guyard; Rachel Higgins; Ernesto Lombos; Donald E Low; Tony Mazzulli; Steven J Drews
Journal:  Int J Infect Dis       Date:  2008-10-11       Impact factor: 3.623

6.  Occurrence of mixed populations of influenza A viruses that can be maintained through transmission in a single host and potential for reassortment.

Authors:  Yuki Furuse; Akira Suzuki; Makiko Kishi; Nao Nukiwa; Midori Shimizu; Rumi Sawayama; Naoko Fuji; Hitoshi Oshitani
Journal:  J Clin Microbiol       Date:  2009-11-25       Impact factor: 5.948

7.  Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic.

Authors:  Gavin J D Smith; Dhanasekaran Vijaykrishna; Justin Bahl; Samantha J Lycett; Michael Worobey; Oliver G Pybus; Siu Kit Ma; Chung Lam Cheung; Jayna Raghwani; Samir Bhatt; J S Malik Peiris; Yi Guan; Andrew Rambaut
Journal:  Nature       Date:  2009-06-25       Impact factor: 49.962

8.  Outbreak of swine-origin influenza A (H1N1) virus infection - Mexico, March-April 2009.

Authors: 
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2009-05-08       Impact factor: 17.586

9.  Dual infections by influenza A/H3N2 and B viruses and by influenza A/H3N2 and A/H1N1 viruses during winter 2007, Corsica Island, France.

Authors:  A Falchi; C Arena; L Andreoletti; J Jacques; N Leveque; T Blanchon; B Lina; C Turbelin; Y Dorléans; A Flahault; J P Amoros; G Spadoni; F Agostini; L Varesi
Journal:  J Clin Virol       Date:  2008-02       Impact factor: 3.168

10.  Susceptibility of human influenza viruses from Australasia and South East Asia to the neuraminidase inhibitors zanamivir and oseltamivir.

Authors:  Aeron C Hurt; Ian G Barr; Gunter Hartel; Alan W Hampson
Journal:  Antiviral Res       Date:  2004-04       Impact factor: 5.970
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  4 in total

1.  Pandemic Seasonal H1N1 Reassortants Recovered from Patient Material Display a Phenotype Similar to That of the Seasonal Parent.

Authors:  Stephanie Sonnberg; Mariette F Ducatez; Jennifer DeBeauchamp; Jeri-Carol Crumpton; Adam Rubrum; Bridgett Sharp; Richard J Hall; Matthew Peacey; Sue Huang; Richard J Webby
Journal:  J Virol       Date:  2016-08-12       Impact factor: 5.103

2.  Rapid differentiation of mixed influenza A/H1N1 virus infections with seasonal and pandemic variants by multitemperature single-stranded conformational polymorphism analysis.

Authors:  Beata Pajak; Ilona Stefanska; Krzysztof Lepek; Stefan Donevski; Magdalena Romanowska; Magdalena Szeliga; Lidia B Brydak; Boguslaw Szewczyk; Krzysztof Kucharczyk
Journal:  J Clin Microbiol       Date:  2011-04-06       Impact factor: 5.948

3.  Does pandemic A/H1N1 virus have the potential to become more pathogenic?

Authors:  Natalia A Ilyushina; Mariette F Ducatez; Jerold E Rehg; Bindumadhav M Marathe; Henju Marjuki; Nicolai V Bovin; Robert G Webster; Richard J Webby
Journal:  mBio       Date:  2010-11-16       Impact factor: 7.867

4.  Rapid detection and subtyping of human influenza A viruses and reassortants by pyrosequencing.

Authors:  Yi-Mo Deng; Natalie Caldwell; Ian G Barr
Journal:  PLoS One       Date:  2011-08-19       Impact factor: 3.240
  4 in total

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